Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05105 and RBAM_030960

See Amino acid alignment / Visit BSNT_05105 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:35
# Commandline: needle
#    -asequence dna-align/BSNT_05105.1.9828.seq
#    -bsequence dna-align/RBAM_030960___yvaP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05105-RBAM_030960___yvaP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05105-RBAM_030960___yvaP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05105
# 2: RBAM_030960___yvaP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 327
# Identity:     256/327 (78.3%)
# Similarity:   256/327 (78.3%)
# Gaps:           9/327 ( 2.8%)
# Score: 1020.0
# 
#
#=======================================

BSNT_05105         1 ATGAACCAATCAGAAATGTGTCCTAGATTTGAAAAAGCAGTCGACATCTT     50
                     ||||||||||||||||||||.||.|||||.||||||||.|||||||||.|
RBAM_030960__      1 ATGAACCAATCAGAAATGTGCCCCAGATTCGAAAAAGCGGTCGACATCCT     50

BSNT_05105        51 AAGTAAACGCTGGGTCGCTTTAATCGTATTTCAGCTCTTGAACGGGTCGC    100
                     |||||||||||||||.|||.|||||||.||||||.|.||||||||...||
RBAM_030960__     51 AAGTAAACGCTGGGTGGCTCTAATCGTCTTTCAGTTATTGAACGGACAGC    100

BSNT_05105       101 AGCGATTTAGCGAAATTGAAGCAGCACTTCCAAATCTAAGCGGCAGAGTT    150
                     ||||||||||||||||||||||.||.|||||.|||.|||||||.|||||.
RBAM_030960__    101 AGCGATTTAGCGAAATTGAAGCGGCGCTTCCGAATTTAAGCGGAAGAGTC    150

BSNT_05105       151 CTGTCAGAACGGCTGAAAGAACTTGAGCTTGAAGGAGTAGTGAAGCGGGA    200
                     .||||||||||..|||||||||||||....|||||.||..|.||.|||||
RBAM_030960__    151 TTGTCAGAACGTTTGAAAGAACTTGAAACAGAAGGTGTCATCAAACGGGA    200

BSNT_05105       201 TGTCATCCCTGAAACTCCGGTTCGCATCGAATATTCATTGACTGATAAAG    250
                     |||.|||||.|||||.||.||.|||||.||.|||||.||.||.||.||||
RBAM_030960__    201 TGTTATCCCCGAAACGCCTGTCCGCATTGAGTATTCTTTAACGGAAAAAG    250

BSNT_05105       251 GAAAGGCACTAGCACCCATATTAGGTGAGATTTCTAAATGGGCGACTGAA    300
                     |....|||.||||.||.||.||||..||.|||||.||.|||.|..|...|
RBAM_030960__    251 GCTGCGCATTAGCCCCTATTTTAGAGGAAATTTCCAAGTGGTCTTCAACA    300

BSNT_05105       301 TGGATTGACCCTTCCTTTCTTGACTAA    327
                     ||||||||.||||||     |||    
RBAM_030960__    301 TGGATTGATCCTTCC-----TGA----    318


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