Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05104 and RBAM_030950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:34
# Commandline: needle
# -asequence dna-align/BSNT_05104___yvaO.1.9828.seq
# -bsequence dna-align/RBAM_030950___yvaO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05104___yvaO-RBAM_030950___yvaO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05104___yvaO-RBAM_030950___yvaO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05104___yvaO
# 2: RBAM_030950___yvaO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 441
# Identity: 313/441 (71.0%)
# Similarity: 313/441 (71.0%)
# Gaps: 30/441 ( 6.8%)
# Score: 1079.0
#
#
#=======================================
BSNT_05104___ 1 ----ATGTCACCGTTCGGACAGCAATTACGGGAGCTGCGCCGCGCCCGCA 46
| || |.||||||.||||||||.|.|||||||||||||||||.|
RBAM_030950__ 1 TTGAA---CA-CATTCGGAAAGCAATTAAGAGAGCTGCGCCGCGCCCGGA 46
BSNT_05104___ 47 AACTGACAGTGAATCAGCTTGCGGTGTACTCAGGCATCAGCTCGGCCACC 96
|.||.||.||.|||||||||||.||.||.||.|||.||||||||||.|||
RBAM_030950__ 47 AGCTTACCGTCAATCAGCTTGCCGTCTATTCCGGCGTCAGCTCGGCGACC 96
BSNT_05104___ 97 ATTTCAAAAATTGAAAACGGCAAACGCGGGACGCCAAAACCCGCCACGAT 146
|||||.|.||||||||||||..|.|||||.|..||.||||||||.||.||
RBAM_030950__ 97 ATTTCCAGAATTGAAAACGGGCACCGCGGCATTCCTAAACCCGCGACCAT 146
BSNT_05104___ 147 TAAAAAACTGGCAGCCGTCCTGAAAGTGCCGTACGAAAACCTAATGGCCG 196
...||||.||||.|.|....|.|||.|.||||||||..|..|||||| ||
RBAM_030950__ 147 CCGAAAATTGGCGGACACATTAAAAATTCCGTACGAGGAGTTAATGG-CG 195
BSNT_05104___ 197 C-CGCAGGCCATATTCAGGCCTTTCCTGAAGAAATCCGCGAAGCATCTGA 245
| .||.||.||.||..||||.||||..|||||||||||||||.|.||.||
RBAM_030950__ 196 CGGGCCGGACACATCAAGGCATTTCAGGAAGAAATCCGCGAAACCTCCGA 245
BSNT_05104___ 246 AAGCTATCAATCCGTTTATGAAATTTACCAGACGGC---TGTCACGCGCG 292
|||||||||||||.|.|..|..||.||.|||||.|| ||.|| |.|
RBAM_030950__ 246 AAGCTATCAATCCATCTGCGCCATCTATCAGACCGCCGTTGACA---GAG 292
BSNT_05104___ 293 GAGCGGAGCACCTCCCGATTTTCAATAGTCAAAAA-TGGGAACATCTCTC 341
|.||||||||.||.|||.|.||..|.|| |||||| |||.|..||.||.|
RBAM_030950__ 293 GCGCGGAGCATCTGCCGCTGTTTGACAG-CAAAAAGTGGCAGTATTTCAC 341
BSNT_05104___ 342 AAAGCAGGATATTGAAAATCTCAGCAAATACTTCGATTTTTTGTCTTCAG 391
|||..|.||||||||||...|||||||||||||.||||||.|..|..|.|
RBAM_030950__ 342 AAAAGAAGATATTGAAAGCGTCAGCAAATACTTTGATTTTATCGCGGCTG 391
BSNT_05104___ 392 AAGCAAAAAAACGCGCCTC---TTCCTCATAA--------- 420
||||.|||||.|||.||.| ||||||||..
RBAM_030950__ 392 AAGCGAAAAAGCGCTCCCCGGATTCCTCATCCTCTTTTTGA 432
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