Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05093 and RBAM_030910

See Amino acid alignment / Visit BSNT_05093 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:34
# Commandline: needle
#    -asequence dna-align/BSNT_05093___yvaK.1.9828.seq
#    -bsequence dna-align/RBAM_030910___yvaK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05093___yvaK-RBAM_030910___yvaK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05093___yvaK-RBAM_030910___yvaK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05093___yvaK
# 2: RBAM_030910___yvaK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 742
# Identity:     640/742 (86.3%)
# Similarity:   640/742 (86.3%)
# Gaps:           2/742 ( 0.3%)
# Score: 2780.0
# 
#
#=======================================

BSNT_05093___      1 ATGAAAGTTGTGACACCAAAACCATTTACATTTAAAGGCGGAGACAAAGC     50
                     ||||||.|||||||||||||||||||||||||||||||||||||||||||
RBAM_030910__      1 ATGAAAATTGTGACACCAAAACCATTTACATTTAAAGGCGGAGACAAAGC     50

BSNT_05093___     51 GGTGCTTTTGCTGCATGGCTTTACAGGAAATACAGCGGATGTAAGGATGC    100
                     |||||||.|||||||.||.|||||.||||||||.||.||.||.||.||||
RBAM_030910__     51 GGTGCTTCTGCTGCACGGATTTACGGGAAATACGGCAGACGTCAGAATGC    100

BSNT_05093___    101 TGGGACGATATTTGAATGAACGCGGCTATACGTGCCACGCGCCTCAATAT    150
                     |.||.||.||.||||||||.||||||||.||.||.|||||||||||||||
RBAM_030910__    101 TCGGCCGCTACTTGAATGAGCGCGGCTACACTTGTCACGCGCCTCAATAT    150

BSNT_05093___    151 GAAGGACATGGCGTCCCGCCTGAAGAACTTGTACATACGGGGCCCGAAGA    200
                     .||||.||.|||||.|||||.||||||||.||||||||||||||.|||||
RBAM_030910__    151 AAAGGGCACGGCGTTCCGCCGGAAGAACTGGTACATACGGGGCCTGAAGA    200

BSNT_05093___    201 CTGGTGGAAAAACGTAATGGATGGCTATGAATACTTAAAATCTGAAGGCT    250
                     .|||||||||.||||.|||||.||.||||||||.|||...||||||||||
RBAM_030910__    201 TTGGTGGAAAGACGTCATGGACGGTTATGAATATTTACGGTCTGAAGGCT    250

BSNT_05093___    251 ATGAGAGCATTGCTGCCTGCGGACTGTCGCTTGGCGGGGTTTTTTCGCTG    300
                     ||||.|.||||||.||||||||||||||||||||||||||||||||..||
RBAM_030910__    251 ATGAAAACATTGCGGCCTGCGGACTGTCGCTTGGCGGGGTTTTTTCATTG    300

BSNT_05093___    301 AAATTGGGTTACACTGTACCCATAAAGGGAATTGTCCCAATGTGCGCACC    350
                     |||||||||||||||||||||||||||||||||||.||.|||||.||.||
RBAM_030910__    301 AAATTGGGTTACACTGTACCCATAAAGGGAATTGTTCCTATGTGTGCGCC    350

BSNT_05093___    351 GATGCATATTAAGAGTGAAGAGGTTATGTATCAAGGCGTTCTTTCATACG    400
                     ||||||.|||||.|||||||||||||||||..||||.||||||||.||||
RBAM_030910__    351 GATGCACATTAAAAGTGAAGAGGTTATGTACGAAGGAGTTCTTTCCTACG    400

BSNT_05093___    401 CTCGCAATTACAAAAAGTTTGAGGGGAAA-AGCCCGGAGCAAATTGAAGA    449
                     |.||||||||.|||||.||.||.||.||| || ||||||||.||||||.|
RBAM_030910__    401 CGCGCAATTATAAAAAATTCGAAGGAAAACAG-CCGGAGCAGATTGAAAA    449

BSNT_05093___    450 GGAAATGAAAGAATTCGAAAAAACGCCGATGAATACCCTCAAGGCACTGC    499
                     |||||||||.||.||.||||||||.|||||||||||.|||||..|.||.|
RBAM_030910__    450 GGAAATGAAGGAGTTTGAAAAAACACCGATGAATACGCTCAAATCGCTTC    499

BSNT_05093___    500 AAGACTTAATTGCTGATGTGCGGAATAATGTCGATATGATTTATTCACCG    549
                     |.||..|.|||||.||||||||.||.||.|||||.|||||.|||||.|||
RBAM_030910__    500 AGGAGCTGATTGCCGATGTGCGCAAAAACGTCGACATGATCTATTCCCCG    549

BSNT_05093___    550 ACATTTGTGGTGCAGGCCCGTCATGACCACATGATTAATACCGAAAGCGC    599
                     |||||||||||.|||||.||.||||||||.|||||||||||.|||||.||
RBAM_030910__    550 ACATTTGTGGTTCAGGCACGGCATGACCATATGATTAATACAGAAAGTGC    599

BSNT_05093___    600 CAATATTATTTACAACGAAGTGGAAACTGATGATAAACAGCTGAAATGGT    649
                     .||.||.|||||.|||||.||||||||.||.||.||||||||||||||||
RBAM_030910__    600 GAACATCATTTATAACGAGGTGGAAACGGACGACAAACAGCTGAAATGGT    649

BSNT_05093___    650 ACGAGGAATCAGGGCATGTCATTACACTCGACAAAGAACGTGACCTCGTC    699
                     |.||.||||||||.|||||||||||.|||||.||||||||.||||||||.
RBAM_030910__    650 ATGAAGAATCAGGCCATGTCATTACGCTCGATAAAGAACGGGACCTCGTT    699

BSNT_05093___    700 CATCAGGATGTGTATGAATTTTTAGAGAAGCTCGATTGGTAA    741
                     ||||||||||||||.||||||||||||||.||||||||||||
RBAM_030910__    700 CATCAGGATGTGTACGAATTTTTAGAGAAACTCGATTGGTAA    741


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