Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05092 and RBAM_030900
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:34
# Commandline: needle
# -asequence dna-align/BSNT_05092___rnrrnr.1.9828.seq
# -bsequence dna-align/RBAM_030900___rnr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05092___rnrrnr-RBAM_030900___rnr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05092___rnrrnr-RBAM_030900___rnr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05092___rnrrnr
# 2: RBAM_030900___rnr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2354
# Identity: 1959/2354 (83.2%)
# Similarity: 1959/2354 (83.2%)
# Gaps: 34/2354 ( 1.4%)
# Score: 8163.0
#
#
#=======================================
BSNT_05092___ 1 ATGGAAAAAGAAGCATTTATGGAAAAGCTTCTCTCGTTTATGAAGGAAGA 50
||||||||||||||.||||||||....||||||.||||||||||||||||
RBAM_030900__ 1 ATGGAAAAAGAAGCGTTTATGGACCGTCTTCTCGCGTTTATGAAGGAAGA 50
BSNT_05092___ 51 GGCGTACAAGCCTCTGACCGTTCAGGAACTTGAGGAGATGTTAAATATTA 100
||||||||||||.||.||||||||||||||||||||||||.|.||.||.|
RBAM_030900__ 51 GGCGTACAAGCCCCTTACCGTTCAGGAACTTGAGGAGATGCTGAACATCA 100
BSNT_05092___ 101 CGGAAGCCGAGGAGTTTAAAGAGCTCGTCAAAGCGTTAGTCGCCTTGGAA 150
|||||||.||.||.|||||||||||.||.||||||.|.||.||..|.||.
RBAM_030900__ 101 CGGAAGCAGATGAATTTAAAGAGCTGGTAAAAGCGCTGGTGGCGCTCGAG 150
BSNT_05092___ 151 GAAAAAGGGCTTATCGTACGGACGAGAAGCGACCGCTACGGCATTCCGGA 200
||.|..||.|..|||||.||.||.||||||.||||||||||..|||||||
RBAM_030900__ 151 GAGACGGGACAGATCGTCCGCACCAGAAGCAACCGCTACGGGCTTCCGGA 200
BSNT_05092___ 201 GAAGATGAATTTAATAAAAGGAAAGATTTCAGCCCATGCGAAAGGATTCG 250
.||.|||||||||.||||||||||.|||||.||.|||||.||.|||||||
RBAM_030900__ 201 AAAAATGAATTTAGTAAAAGGAAAAATTTCCGCGCATGCAAAGGGATTCG 250
BSNT_05092___ 251 CCTTTTTGCTGCCTGAGGATACGTCGTTAAGTGATGTGTTTATTCCGCCT 300
|.|||.|..||||.||||||||.||.|||||.|||||||||||||||||.
RBAM_030900__ 251 CGTTTCTATTGCCGGAGGATACCTCTTTAAGCGATGTGTTTATTCCGCCG 300
BSNT_05092___ 301 AATGAGCTAAATACGGCAATGAACGGCGATATCGTCATGGTGCGTCTGAA 350
||||||||.||||||||.||||||||||||||||||||||||||.||.||
RBAM_030900__ 301 AATGAGCTGAATACGGCCATGAACGGCGATATCGTCATGGTGCGGCTCAA 350
BSNT_05092___ 351 CTCACAGTCAAGCGGCTCCAGGCAGGAAGGAACCGTCATACGGATTTTAG 400
.||.|||||||||||.||.||.||||||||.||.|||||.||.||.||.|
RBAM_030900__ 351 TTCCCAGTCAAGCGGATCGAGACAGGAAGGCACGGTCATCCGCATCTTGG 400
BSNT_05092___ 401 AAAG-AGCGATTCAGCGGGTTGTCGGCACGTATACAGAAACGAGAAACTT 449
|||| ||| ||..|.||.||.||.|||||.||.||||||||||.||.|||
RBAM_030900__ 401 AAAGAAGC-ATCGACCGCGTCGTGGGCACATACACAGAAACGAAAAGCTT 449
BSNT_05092___ 450 CGGCTTTGTCATTCCGGACGACAAAAAAATCACGAGTGACATCTTCATTC 499
|||.||||||||.|||||.||.||.||||||||||||||.||.||.||||
RBAM_030900__ 450 CGGTTTTGTCATCCCGGATGATAAGAAAATCACGAGTGATATTTTTATTC 499
BSNT_05092___ 500 CGAAAAATGGGAAAAATGGAGCTGCGGAAGGGCATAAGGTTGTTGTCAAG 549
|||||.|||..||.||.||.|||||||||||.|||||.||.||.|||||.
RBAM_030900__ 500 CGAAACATGCCAATAACGGCGCTGCGGAAGGCCATAAAGTCGTCGTCAAA 549
BSNT_05092___ 550 CTGACGAGCTATCCTGAAGGCCGCATGAACGCAGAGGGTGA---GGTTGA 596
|||||.|||||.|||||||||.|.||||||||.||.||.|| .|||||
RBAM_030900__ 550 CTGACAAGCTACCCTGAAGGCAGAATGAACGCCGAAGGAGAAATCGTTGA 599
BSNT_05092___ 597 AACCATTCTCGGCCACAAAAACGACCCGGGCATTGATATTTTATCAGTCA 646
| ||.||||||||.|||||.||.||||||||.||||||||||||.|.|
RBAM_030900__ 600 A---ATACTCGGCCATAAAAATGATCCGGGCATCGATATTTTATCAATTA 646
BSNT_05092___ 647 TTCATAAGCACGGCCTGCCGGGAGAATTTCCAGCTGACGCGATGGAACAG 696
|.|||||||||||||||||||||||.|||||.|||||.||||||||.|||
RBAM_030900__ 647 TCCATAAGCACGGCCTGCCGGGAGATTTTCCGGCTGAAGCGATGGAGCAG 696
BSNT_05092___ 697 GCATCAAGTACGCCTGACACGATTGATGAAAAAGATCTGAAAGACCGCCG 746
|||.||||.|||||.||.||.||.|||||||||||..|.|||||||||||
RBAM_030900__ 697 GCAACAAGCACGCCGGATACCATCGATGAAAAAGACATCAAAGACCGCCG 746
BSNT_05092___ 747 TGATCTCCGTGACCAGGTGATTGTCACCATTGATGGTGCGGATGCGAAGG 796
|||||||||.||.|||||.||||||||||||||.||.|||||||||||||
RBAM_030900__ 747 TGATCTCCGCGATCAGGTCATTGTCACCATTGACGGCGCGGATGCGAAGG 796
BSNT_05092___ 797 ATTTGGATGATGCAGTTACCGTGACGAAGCTTGATGATGGAAGCTACAAG 846
||.|||||||.||.||.||||||||.|||||||||.|.||.|||||||||
RBAM_030900__ 797 ATCTGGATGACGCCGTCACCGTGACAAAGCTTGATAACGGCAGCTACAAG 846
BSNT_05092___ 847 CTTGGCGTTCACATAGCTGATGTCAGCCATTACGTAACCGAAAACTCGCC 896
||.|||||.||.||.||.||.||||||||||||||.||.||.||.||.||
RBAM_030900__ 847 CTCGGCGTCCATATTGCCGACGTCAGCCATTACGTCACGGAGAATTCCCC 896
BSNT_05092___ 897 GATTGACAAAGAAGCGCTTGAAAGAGGGACAAGTGTGTATCTGGTTGACC 946
||||||||||||||||||.||||||||||||||.|||||..|||||||||
RBAM_030900__ 897 GATTGACAAAGAAGCGCTGGAAAGAGGGACAAGCGTGTACTTGGTTGACC 946
BSNT_05092___ 947 GTGTCATCCCGATGATTCCGCACAGATTGTCAAACGGCATCTGCTCCTTA 996
|.|||||.||||||||||||||||||.||||.|||||.|||||.||.|||
RBAM_030900__ 947 GGGTCATTCCGATGATTCCGCACAGACTGTCTAACGGAATCTGTTCTTTA 996
BSNT_05092___ 997 AATCCAAAGGTTGACCGCCTGACGCTTTCTTGTGAAATGACAATTAA-CA 1045
|||||.|||||.|||||||||||||||||.||.|||||||||||.|| ||
RBAM_030900__ 997 AATCCGAAGGTCGACCGCCTGACGCTTTCCTGCGAAATGACAATCAACCA 1046
BSNT_05092___ 1046 GTCAGGGACAGGTGACAGAGCACGAGATATTCCAAAGTGTCATCAAAACA 1095
| |||||.||||||||||||||||||||.||||||||.|||||.|||||.
RBAM_030900__ 1047 G-CAGGGCCAGGTGACAGAGCACGAGATCTTCCAAAGCGTCATTAAAACG 1095
BSNT_05092___ 1096 ACGGAAAGAATGACATATTCAGATGTGAATAAAATTCTTGTTGACGATGA 1145
||||||||||||||.|||||||||||.||....||.||....||.||.||
RBAM_030900__ 1096 ACGGAAAGAATGACCTATTCAGATGTCAACCGGATCCTCACAGAAGACGA 1145
BSNT_05092___ 1146 TGAAGAGCTGAAACAAAAATACGAGCCTCTTGTTCCGATGTTCAAAGACA 1195
.|..|||||||||.|||.|||.|||||.||.||.||||||||.|||||||
RBAM_030900__ 1146 CGCCGAGCTGAAAGAAAGATATGAGCCGCTCGTCCCGATGTTTAAAGACA 1195
BSNT_05092___ 1196 TGGAGCGTCTGGCTCAAATTCTGCGCGATAAGCGGATGGACCGCGGCGCC 1245
||||.||||||||..|||||||.||.|..||.||||||||||||||||||
RBAM_030900__ 1196 TGGAACGTCTGGCGGAAATTCTCCGGGCGAAACGGATGGACCGCGGCGCC 1245
BSNT_05092___ 1246 GTTGACTTTGATTTCAAAGAAGCAAAGGTGCTTGTTGATGACGAAGGAGC 1295
||.||.||||||||||||||.||.||.|||||.||.|||||.|||||.||
RBAM_030900__ 1246 GTGGATTTTGATTTCAAAGAGGCGAAAGTGCTCGTCGATGAGGAAGGCGC 1295
BSNT_05092___ 1296 GGTTAAAGACGTTGTGATCAGAGAACGCTCTGTCGCCGAGAAGCTGATTG 1345
.||.||||||||.||.||||||||.|||||.||.||.||.||||||||||
RBAM_030900__ 1296 CGTAAAAGACGTCGTCATCAGAGAGCGCTCAGTAGCGGAAAAGCTGATTG 1345
BSNT_05092___ 1346 AAGAATTTATGCTTGTAGCAAACGAAACAGTGGCGGAGCATTTCCATTGG 1395
|||||||.||||||||.|||||||||||.|||||.|||||.|||||||||
RBAM_030900__ 1346 AAGAATTCATGCTTGTCGCAAACGAAACGGTGGCCGAGCACTTCCATTGG 1395
BSNT_05092___ 1396 ATGAACGTCCCGTTTATATACCGGATTCACGAAGAGCCGAATGCTGAAAA 1445
||||||||.||||||||.|||||||||||||||||||||||.||.|||||
RBAM_030900__ 1396 ATGAACGTGCCGTTTATTTACCGGATTCACGAAGAGCCGAACGCCGAAAA 1445
BSNT_05092___ 1446 GCTGCAAAAGTTTTTAGAATTTGTGACGACATTTGGCTATGTGGTGAAAG 1495
.|||||||||||..|.||.||.||.||||||||.||.|||.|.||.||||
RBAM_030900__ 1446 ACTGCAAAAGTTCCTGGAGTTCGTCACGACATTCGGTTATATCGTTAAAG 1495
BSNT_05092___ 1496 GAACGGCGGGGAATATTCATCCGCGCGCGTTGCAAAGCATTCTGGACGCT 1545
|||..||.||..|.|||||||||||||||.|||||||||||||.||.|..
RBAM_030900__ 1496 GAAAAGCCGGAGACATTCATCCGCGCGCGCTGCAAAGCATTCTTGATGAA 1545
BSNT_05092___ 1546 GTGCGTGACAGACCAGAGGAAACGGTTATATCTACTGTTATGCTCCGTTC 1595
|||||.|||.|.||.||.||||||||.||.||.||.||.|||||||||||
RBAM_030900__ 1546 GTGCGGGACCGTCCGGAAGAAACGGTGATTTCAACCGTCATGCTCCGTTC 1595
BSNT_05092___ 1596 GATGAAACAGGCGAAATACGACCCGCAAAGCTTGGGGCACTTCGGTCTGT 1645
.|||||.||||||||||||||||||||||||.||||.||.|||||.|||.
RBAM_030900__ 1596 CATGAAGCAGGCGAAATACGACCCGCAAAGCCTGGGCCATTTCGGGCTGG 1645
BSNT_05092___ 1646 CAACGGAATTCTATACGCATTTCACATCGCCGATCCGCCGTTATCCGGAC 1695
|.||.|||||.||||||||.||||||||||||||||||||||||||.|||
RBAM_030900__ 1646 CGACTGAATTTTATACGCACTTCACATCGCCGATCCGCCGTTATCCTGAC 1695
BSNT_05092___ 1696 TTAATCGTTCACCGCCTGATCCGAACGTATTTGATCAACGG-CAAAGTC- 1743
||||||||||||.|.||||||.||||||||||||||||||| ||| ||
RBAM_030900__ 1696 TTAATCGTTCACAGGCTGATCAGAACGTATTTGATCAACGGACAA--TCG 1743
BSNT_05092___ 1744 GATGAAGCGACTCAGGAAAAGTGGGCTGAACGCCTGCCGGATATCGCCGA 1793
||.|||||||||||.|||||||||||.||||||||.|||||.|||||.||
RBAM_030900__ 1744 GACGAAGCGACTCAAGAAAAGTGGGCCGAACGCCTTCCGGAAATCGCTGA 1793
BSNT_05092___ 1794 ACATACATCATCAATGGAGCGCCGTGCAGTTGACGCCGAGCGTGAGACGG 1843
.|||||.|||.|.|||||.||.||.||.|||||.||.|||||.||.||||
RBAM_030900__ 1794 CCATACGTCAACGATGGAACGGCGCGCCGTTGATGCAGAGCGGGAAACGG 1843
BSNT_05092___ 1844 ATGATCTGAAAAAAGCGGAATACATGCTTGATAAAATCGGTGAAGAGTTT 1893
|.||||||||||||||||||||.|||||||||||||||||.||.||.|||
RBAM_030900__ 1844 ACGATCTGAAAAAAGCGGAATATATGCTTGATAAAATCGGCGAGGAATTT 1893
BSNT_05092___ 1894 GACGGCATGATCAGCTCTGTGACAAACTTCGGAATGTTCGTCGAGCTGCC 1943
||||||||||||||.||.||.||.||.|||||||||||.|||||||||||
RBAM_030900__ 1894 GACGGCATGATCAGTTCCGTCACGAATTTCGGAATGTTTGTCGAGCTGCC 1943
BSNT_05092___ 1944 GAATACAATTGAAGGACTCGTCCACGTCAGCTTTATGACAGATGACTACT 1993
||||||.||||||||.||.||.|||||||||||||||||.|||||.||.|
RBAM_030900__ 1944 GAATACGATTGAAGGTCTTGTGCACGTCAGCTTTATGACGGATGATTATT 1993
BSNT_05092___ 1994 ACCGATTTGACGAACAGCATTTCGCAATGATCGGCGAGCGGACAGGCAAC 2043
||||.||||||||.|||||||||||.|||||||||||.||.||.||||||
RBAM_030900__ 1994 ACCGTTTTGACGAGCAGCATTTCGCCATGATCGGCGAACGCACGGGCAAC 2043
BSNT_05092___ 2044 GTCTTCCGCATCGGGGATGAAATCACAGTCAAGGTTGTCGATGTCAATAA 2093
||.|.|||.|||||.|||||||||||.|||||.||.|||||.||||||||
RBAM_030900__ 2044 GTTTACCGGATCGGAGATGAAATCACGGTCAAAGTCGTCGACGTCAATAA 2093
BSNT_05092___ 2094 AGATGAGCGCAATATCGACTTTGAAATTGTCGGCATGAAGGGCACTCCGC 2143
|||||||.|.||.||||||||||||||||||||||||||.||||| ||||
RBAM_030900__ 2094 AGATGAGAGAAACATCGACTTTGAAATTGTCGGCATGAAAGGCAC-CCGC 2142
BSNT_05092___ 2144 GGCGTCCGAGAGAATTGGACAGCAGCCGGA--GCAGAAAACGCGGAAAGC 2191
|||||||||||| ||..|||.| || |||||||||||||.|..|
RBAM_030900__ 2143 --CGTCCGAGAGAA----ACGACAGGC-GACCGCAGAAAACGCGGCAGAC 2185
BSNT_05092___ 2192 CTGCCAGAAAA--CGTGTTCAAAGCACCAATACACCTGTGTCTCCAGCTC 2239
|.||..|.||| |||||| ||.||.||||||.|| |.||.||.|.|
RBAM_030900__ 2186 CGGCGCGGAAACGCGTGTT--AAACAGCAATACCCC---GGCTTCACCGC 2230
BSNT_05092___ 2240 CG---TCTGAGGAAAAAGGGGAGTGGTTCACTAAGCCGAAGAAGAAAAAG 2286
|| ||.||||||||||||||.|||||.||.||.|||||||||||||||
RBAM_030900__ 2231 CGAAATCGGAGGAAAAAGGGGAATGGTTTACAAAACCGAAGAAGAAAAAG 2280
BSNT_05092___ 2287 AAAAAACGCGGCTTCCAGAATGCTCCGAAACAGAAACGGAAAAAGAAGAA 2336
|||||||||||.|||||.||.||.||||||||.|||||.|||||||||||
RBAM_030900__ 2281 AAAAAACGCGGTTTCCAAAACGCGCCGAAACAAAAACGCAAAAAGAAGAA 2330
BSNT_05092___ 2337 ATAG 2340
.||.
RBAM_030900__ 2331 GTAA 2334
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