Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05016 and RBAM_030870

See Amino acid alignment / Visit BSNT_05016 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:34
# Commandline: needle
#    -asequence dna-align/BSNT_05016___yvaG.1.9828.seq
#    -bsequence dna-align/RBAM_030870___yvaG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05016___yvaG-RBAM_030870___yvaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05016___yvaG-RBAM_030870___yvaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05016___yvaG
# 2: RBAM_030870___yvaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     614/822 (74.7%)
# Similarity:   614/822 (74.7%)
# Gaps:          51/822 ( 6.2%)
# Score: 2256.5
# 
#
#=======================================

BSNT_05016___      1 ATGAAGCTGAATTTAC------AAGGAAAAACCGCACTGGTGACCGGTTC     44
                     ||||   ||.||||.|      |||||||.||.||.||.|||||.||.||
RBAM_030870__      1 ATGA---TGGATTTGCAGTTGAAAGGAAAGACGGCGCTTGTGACGGGATC     47

BSNT_05016___     45 GACATCAGGGATCGGAAAAGCTATTGCCTCTTCGTTAGCTGA----AGAA     90
                     .||.|||||.|||||.||.||.|||||..||||    |||||    ||||
RBAM_030870__     48 TACGTCAGGCATCGGGAAGGCGATTGCGGCTTC----GCTGATTGCAGAA     93

BSNT_05016___     91 GGTGCGGCAGTGATCATTAACGGACGCCGGGAAGAGAAAGTGAATCAGAC    140
                     ||||||||.||||||||||||||||||||.|||||.||.|||||..|.||
RBAM_030870__     94 GGTGCGGCTGTGATCATTAACGGACGCCGTGAAGAAAAGGTGAACGAAAC    143

BSNT_05016___    141 GATAGATGAACT-GA-AAACACAAC-----ATGCTGAAGCGGTTCTTTAT    183
                     |||....||||| || ||||| .||     ||||     |.| |||.|||
RBAM_030870__    144 GATCCGGGAACTAGAGAAACA-GACGCCGGATGC-----CCG-TCTCTAT    186

BSNT_05016___    184 CCGGCCGCATTTGATTTGGGAACTGAAGAAGGCTGCAATGAGCTGTTTCA    233
                     |||||||||||||||||.||.||.|..|||||.|||...|.|.|.|||||
RBAM_030870__    187 CCGGCCGCATTTGATTTAGGCACGGCGGAAGGATGCGGCGCGATTTTTCA    236

BSNT_05016___    234 G--GCATATCCAGAGGTTGATATTTTGGTCAACAATTTAGGGATTTTTGA    281
                     |  ||  |.||.||.||.||||||.|.||||||||||||||.||.|||||
RBAM_030870__    237 GCAGC--ACCCTGATGTGGATATTCTCGTCAACAATTTAGGAATCTTTGA    284

BSNT_05016___    282 ACCGGCGGAGTACTTTGATATTCCCGACGATGAATGGTTTCGTTTTTTTG    331
                     |||.|||||.||||||||||||||.|||||.||.|||.|.||.|||||.|
RBAM_030870__    285 ACCTGCGGAATACTTTGATATTCCTGACGAAGAGTGGCTCCGGTTTTTCG    334

BSNT_05016___    332 AAGTGAATATTATGAGCGGTGTAAGGCTGACACGCAGGTATTTGCATAAC    381
                     |.||||||||.||||||||.||.||||||||||||.||||  ||||.|.|
RBAM_030870__    335 AGGTGAATATCATGAGCGGCGTGAGGCTGACACGCCGGTA--TGCAAAGC    382

BSNT_05016___    382 --ATGATAGAGAAAAAAGAAGGGCGTGTGATTTTCATTGCCAGTGAAGCG    429
                       |||||.||....||.||||||||.||||||||.||.||.|||||||||
RBAM_030870__    383 GGATGATTGAACGGAAGGAAGGGCGGGTGATTTTTATCGCGAGTGAAGCG    432

BSNT_05016___    430 GCGATTATGCCGTCACAGGAAATGGCCCATTACAGTGCGACAAAAACGAT    479
                     ||..|.|||||.||.||||||||||||||||||||.||.||.|||||.|.
RBAM_030870__    433 GCCGTCATGCCTTCTCAGGAAATGGCCCATTACAGCGCTACGAAAACAAC    482

BSNT_05016___    480 GCAGCTGTCCATTTCCCGCAGTTTGGCGGAGCT---GGCAACCGGCACGA    526
                     |||||||||..|.||.||||||.||||.|||||   ||.|   ||.||||
RBAM_030870__    483 GCAGCTGTCGCTGTCACGCAGTCTGGCCGAGCTCACGGAA---GGGACGA    529

BSNT_05016___    527 ATGTCACAGTCAACACCGTCATGCCGGGCTCTACCTTAACAGAGGGTGTG    576
                     ||||.||.||.||.||.||||||||||||||.||...|||||||||.||.
RBAM_030870__    530 ATGTGACGGTGAATACGGTCATGCCGGGCTCCACAAAAACAGAGGGCGTC    579

BSNT_05016___    577 GAAACCATGCTGAACTCGCTGTATCCTGGTGAAAACCTGACTGTTCAAGA    626
                     |||||.|||||..|.|||||.|||||.||||||||||||||.|.....||
RBAM_030870__    580 GAAACGATGCTTGAGTCGCTTTATCCCGGTGAAAACCTGACCGCGGCGGA    629

BSNT_05016___    627 AGCTGAGGCACGTTTTATGAAAGAAAACCGGCCGACATCTATTATTCAAA    676
                     .||.|||..|||.||||||||.||.||.||.|||||.||.||.|||||..
RBAM_030870__    630 GGCGGAGAGACGATTTATGAAGGAGAATCGTCCGACGTCGATCATTCAGC    679

BSNT_05016___    677 GACTGATCCGTCCGGAAGAAATCGCCCACTTCGTTACATTTTTAAGCAGC    726
                     |..||||||||||||||||||||||.|||||.||..|.||||||||||||
RBAM_030870__    680 GGTTGATCCGTCCGGAAGAAATCGCTCACTTTGTCGCCTTTTTAAGCAGC    729

BSNT_05016___    727 CCGCTTTCCTCTGCGATCAATGGCGCGGCACTTCGGGCAGACGGCGGTTT    776
                     |||||.||.|||||.||.||.||..|.|||.|.|||...||||||||.||
RBAM_030870__    730 CCGCTGTCGTCTGCCATTAACGGATCTGCATTGCGGATCGACGGCGGCTT    779

BSNT_05016___    777 GGTCCGCAGTGTCTTTTAA---    795
                     |||.||.||   |.||..|   
RBAM_030870__    780 GGTGCGGAG---CATTATATGA    798


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05016 and RBAM_030870

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
