Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05006 and RBAM_030720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:33
# Commandline: needle
# -asequence dna-align/BSNT_05006.1.9828.seq
# -bsequence dna-align/RBAM_030720___yvaB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05006-RBAM_030720___yvaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05006-RBAM_030720___yvaB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05006
# 2: RBAM_030720___yvaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 637
# Identity: 397/637 (62.3%)
# Similarity: 397/637 (62.3%)
# Gaps: 167/637 (26.2%)
# Score: 1662.5
#
#
#=======================================
BSNT_05006 0 -------------------------------------------------- 0
RBAM_030720__ 1 ATGGCAAAAGTACTTTATATCACTGCTCATCCTCATGATGAAAAGACATC 50
BSNT_05006 0 -------------------------------------------------- 0
RBAM_030720__ 51 TTACAGCATGGCGACAGGAAAAGCGTTTATCGATTCTTATAAAGAATCAA 100
BSNT_05006 0 -------------------------------------------------- 0
RBAM_030720__ 101 ACCCGAATGATGAGGTTGTACATATCGACCTTTACAAAGAGAACATTCCT 150
BSNT_05006 1 -------------ATGTATTTAGCG--TGGGGAAAGCTTCAGTCAGGTAC 35
|||||||.|||| ||||||||.|||||.||.||.||
RBAM_030720__ 151 CATATCGACGCGGATGTATTCAGCGGCTGGGGAAAACTTCAATCCGGCAC 200
BSNT_05006 36 AGGCTTTGAAGAGCTTTCTGAAAGCGAAAAAGCGAAAGTAGGCCGTTTGG 85
|||.|||||||||||||||||||.|||||||||||||||.||||||.||.
RBAM_030720__ 201 AGGTTTTGAAGAGCTTTCTGAAAACGAAAAAGCGAAAGTCGGCCGTCTGA 250
BSNT_05006 86 GAGAGCTTAGCGATCAATTTGCATCAGCTGATAAGTACGTATTTGTTACT 135
..|||||.|||||||||||.||..|||||||.||.||||||||.||.||.
RBAM_030720__ 251 ACGAGCTGAGCGATCAATTCGCGGCAGCTGACAAATACGTATTCGTCACA 300
BSNT_05006 136 CCTTTATGGAACTTCTCATTCCCGCCAGTGATGAAAGCGTATCTCGATTC 185
||..|.||||||||||||||||||||.||.|||||||||||.||.|||||
RBAM_030720__ 301 CCGCTTTGGAACTTCTCATTCCCGCCTGTTATGAAAGCGTACCTTGATTC 350
BSNT_05006 186 TGTTGCTGTTGCAGGAAAATCATTCAAATACACAGAACAAGGCCCTATTG 235
|||.|||||.||.|||||||||||||||||.|||||.||||||||.||.|
RBAM_030720__ 351 TGTGGCTGTAGCCGGAAAATCATTCAAATATACAGAGCAAGGCCCGATCG 400
BSNT_05006 236 GCTTGTTGACTGATAAAAAAGCAATTCATATCCAAGCGCGCGGCGGCTAC 285
|..|||||||.||.||||||||..|.||.||.||.||||||||.|||||.
RBAM_030720__ 401 GTCTGTTGACAGACAAAAAAGCGCTCCACATTCAGGCGCGCGGAGGCTAT 450
BSNT_05006 286 TATTCAGAAGGCCCTGCGGCTGAGATGGAAATGGGGCACCGCTACATCGG 335
||.||.|||||.||.||||||||.|||||||||||.|||||.||||||||
RBAM_030720__ 451 TACTCTGAAGGACCGGCGGCTGACATGGAAATGGGCCACCGTTACATCGG 500
BSNT_05006 336 CATCATGATGAACTTCTTCGGCGTACCATCATTCGAAGGCATT-TTCGTA 384
||||||||||||||||||||||||.||.||.|||||.|| ||| .||||.
RBAM_030720__ 501 CATCATGATGAACTTCTTCGGCGTTCCTTCTTTCGACGG-ATTAATCGTT 549
BSNT_05006 385 GAGGGACATAATGCGGAGCCTGATAAAGCACAGCAAATCAAAGAAGACGC 434
||.||.||||||||.||.||..||||||||||||||||.||||||||.||
RBAM_030720__ 550 GAAGGCCATAATGCTGAACCGAATAAAGCACAGCAAATTAAAGAAGATGC 599
BSNT_05006 435 GATTGCGCGTGCGAAAGAAGCAGGAAAAACATTCTAA 471
||||||.||.|||||||||||.||||||.||||||.|
RBAM_030720__ 600 GATTGCCCGCGCGAAAGAAGCCGGAAAATCATTCTGA 636
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