Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04981 and RBAM_030570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_04981___yvgN.1.9828.seq
# -bsequence dna-align/RBAM_030570___yvgN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04981___yvgN-RBAM_030570___yvgN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04981___yvgN-RBAM_030570___yvgN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04981___yvgN
# 2: RBAM_030570___yvgN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 833
# Identity: 646/833 (77.6%)
# Similarity: 646/833 (77.6%)
# Gaps: 52/833 ( 6.2%)
# Score: 2669.0
#
#
#=======================================
BSNT_04981___ 1 ------------------------------------------------AT 2
||
RBAM_030570__ 1 GTGGCAAAAAGCTTAAAAGATACTGTAAAGCTTCATAATGGCGTTGAAAT 50
BSNT_04981___ 3 GCCTTGGTTCGGTCTGGGTGTTTTTAAAGTAGAAAATGGTAATGAAGCGA 52
|||.||||||||.||.||.||.||.||.||.|||||.||.|..|.||||.
RBAM_030570__ 51 GCCGTGGTTCGGCCTTGGCGTCTTCAAGGTGGAAAACGGAAGCGTAGCGG 100
BSNT_04981___ 53 CTGAATCAGTGAAAGCGGCAATTAAAAATGGCTATCGCAGCATTGATACA 102
|.||.||.||..||||||||||.|.|||.|||||.||||||||||||||.
RBAM_030570__ 101 CGGACTCCGTCGAAGCGGCAATCAGAAACGGCTACCGCAGCATTGATACG 150
BSNT_04981___ 103 GCAGCGATCTACAAAAATGAAGAAGGCGTTGGCATCGGGATTAAAGAATC 152
||.||.||.||||||||||||||.||.||.|||...||.||.|.||...|
RBAM_030570__ 151 GCGGCTATTTACAAAAATGAAGAGGGTGTCGGCGAAGGCATCAGAGCTGC 200
BSNT_04981___ 153 CGGTGTGGCAAGAGAAGAGCTCTTCATCACATCAAAAGTGTGGAATGAAG 202
.||.||.||.|||||||||||.||||||||.|||||||||||||||||||
RBAM_030570__ 201 GGGCGTTGCCAGAGAAGAGCTGTTCATCACGTCAAAAGTGTGGAATGAAG 250
BSNT_04981___ 203 AGCAAGGCTACGAAACAACGCTTGCTGCCTTTGAAAAGAGTCTGGAAAGA 252
|.|||||.||||||||.||.||||..||.|||||.||.||.||.||..|.
RBAM_030570__ 251 ATCAAGGATACGAAACGACACTTGACGCGTTTGAGAAAAGCCTTGAGCGC 300
BSNT_04981___ 253 TT--GCAGCTTGATTACTTAGATTTATATTTGATCCACTGGCCTGGCAAA 300
.| || ||.||||||.|.||..|.||..||||.||||||||.|||||.
RBAM_030570__ 301 CTCGGC--CTCGATTACCTCGACCTTTACCTGATTCACTGGCCGGGCAAG 348
BSNT_04981___ 301 GATAAATATAAAGATACATGGCGCGCGCTTGAAAAGCTGTACAAAGACGG 350
||||||||||||||.|||||||||||.|||||||||||||||||||||||
RBAM_030570__ 349 GATAAATATAAAGACACATGGCGCGCTCTTGAAAAGCTGTACAAAGACGG 398
BSNT_04981___ 351 CAAAATCCGCGCGATCGGCGTCAGCAACTTCCAAGTTCATCATTTAGAAG 400
.|||||||||||.|||||||||||||||||||||||.|||||||||||||
RBAM_030570__ 399 TAAAATCCGCGCAATCGGCGTCAGCAACTTCCAAGTGCATCATTTAGAAG 448
BSNT_04981___ 401 AGCTGTTGAAAGATGCTGAAATCAAACCGATGGTGAACCAAGTTGAGTTT 450
|.|||.|||||||||||||||||||.||||||||.|||||..||||.||.
RBAM_030570__ 449 AACTGCTGAAAGATGCTGAAATCAAGCCGATGGTCAACCAGATTGAATTC 498
BSNT_04981___ 451 CACCCTCGCTTGACGCAAAAAGAATTAAGAGATTACTGCAAAGCGCAAGG 500
|||||.|||.||||.|||||||||.|||||||||.||||||||||||.||
RBAM_030570__ 499 CACCCGCGCCTGACTCAAAAAGAAGTAAGAGATTTCTGCAAAGCGCAGGG 548
BSNT_04981___ 501 CATTCAGCTGGAAGCGTGGTCTCCGCTCATGCAGGGACAGCTTTTGGATA 550
||||||..|||||||.||||||||..|.||||||||||||||..|.||||
RBAM_030570__ 549 CATTCAAGTGGAAGCATGGTCTCCATTGATGCAGGGACAGCTCCTCGATA 598
BSNT_04981___ 551 ACGAAGTACTGACACAGATTGCTGAAAAACACAATAAATCTGTGGCTCAA 600
|||||||.|||.||||.|||||.||||||||.||.|||||.||.||||||
RBAM_030570__ 599 ACGAAGTGCTGTCACAAATTGCGGAAAAACATAACAAATCGGTTGCTCAA 648
BSNT_04981___ 601 GTGATTTTGCGCTGGGATCTGCAGCATGAAGTTGTAACCATTCCAAAATC 650
||||||||||||||||||||.|||.|.|||||.||.||||||||.|||||
RBAM_030570__ 649 GTGATTTTGCGCTGGGATCTTCAGAACGAAGTCGTTACCATTCCGAAATC 698
BSNT_04981___ 651 CATTAAAGAACACCGTATCATCGAAAACGCTGATATTTTTGATTTCGAAT 700
.||||||||.|||||.|||||.|||||.||.||||||||||||||||||.
RBAM_030570__ 699 GATTAAAGAGCACCGCATCATAGAAAATGCCGATATTTTTGATTTCGAAC 748
BSNT_04981___ 701 TGTCTCAAGAAGACATGGACAAAATTGACGCATTAAATAAAGATGAGCGT 750
||||.||.|||||.|||||.||.||...||||||.||.|||||.||||||
RBAM_030570__ 749 TGTCACAGGAAGAAATGGAAAAGATCAGCGCATTGAACAAAGACGAGCGT 798
BSNT_04981___ 751 GTCGGCCCAAATCCTGATGAGCTTCTGTTTTAA 783
||||||||.|||||.||.|||||||||||.|||
RBAM_030570__ 799 GTCGGCCCGAATCCGGACGAGCTTCTGTTCTAA 831
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