Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04979 and RBAM_030510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:31
# Commandline: needle
# -asequence dna-align/BSNT_04979.1.9828.seq
# -bsequence dna-align/RBAM_030510___yvgM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04979-RBAM_030510___yvgM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04979-RBAM_030510___yvgM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04979
# 2: RBAM_030510___yvgM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 437/690 (63.3%)
# Similarity: 437/690 (63.3%)
# Gaps: 135/690 (19.6%)
# Score: 1639.0
#
#
#=======================================
BSNT_04979 1 ATGGCTTTACTGCCGAGTAGCATAAGCGCTTCAGAATTTTTCACACCCGT 50
RBAM_030510__ 0 -------------------------------------------------- 0
BSNT_04979 51 TGCGCTTTCCTTTCAGGTGGCGGCAGTTGCCGGAATTGTTGTCATTATTC 100
RBAM_030510__ 0 -------------------------------------------------- 0
BSNT_04979 101 TCGGAACACTTGCTGGAGCATGG---ATGTCACGGGCATCATTTTTCGGA 147
|||| |.| ||.| ||||..||||
RBAM_030510__ 1 -------------------ATGGCGAAAG---CGCG----ATTTCCCGGA 24
BSNT_04979 148 AAAACGGCACTCGA-AACATGTTTTATGCTTCCGCTCGTTCTTCCGCCTA 196
||||||||..|.|| |.|.|| ||||||||.|||||||||||||||||||
RBAM_030510__ 25 AAAACGGCTGTGGAGACCCTG-TTTATGCTCCCGCTCGTTCTTCCGCCTA 73
BSNT_04979 197 CTGTTGTCGGTTTTATTTTGATCGTCATTTTCGGAAAGCACAGCTTCATC 246
|.||||||||.||.|||.|.||..|.||||||||.||.||||||||.|||
RBAM_030510__ 74 CCGTTGTCGGCTTCATTCTCATTATTATTTTCGGGAAACACAGCTTTATC 123
BSNT_04979 247 GGACAAGCCATCGAGTGGATTTTCCAGCAGCCTGTCATTTTCACCTGGTG 296
||.|...|.||||||.|||||||.||.|||||.|||||||||||.||||.
RBAM_030510__ 124 GGCCGGACGATCGAGCGGATTTTTCACCAGCCCGTCATTTTCACGTGGTC 173
BSNT_04979 297 GGCCGCTGTGATCGCCTCGGCTGTTGTAGCCTTTCCGCTTATGTATCAAT 346
||||||.||||||||.|||||..||||.|||||.||||||||||||||.|
RBAM_030510__ 174 GGCCGCGGTGATCGCTTCGGCCATTGTCGCCTTCCCGCTTATGTATCAGT 223
BSNT_04979 347 CAGCCAAAACCGGATTTGCTGACATTGATCCCGATATACAAGGTGCGGCA 396
|.||.|||||.||.||.||.|...|||||.||||.||..|.||.|||||.
RBAM_030510__ 224 CCGCTAAAACGGGCTTCGCCGCGGTTGATGCCGACATTGAGGGAGCGGCG 273
BSNT_04979 397 ATGGTAGACGGCGCTAGCAGATGGAAAGTGTTTATCCATATCTCCGTCCC 446
|..||||||||.||..||||.|||.|.|||||.|.||..||.||||||||
RBAM_030510__ 274 AAAGTAGACGGAGCCGGCAGGTGGCAGGTGTTCACCCGCATTTCCGTCCC 323
BSNT_04979 447 GCTTGCCTATCCTTCGTTACTGACCGGAAGCATCCTCAGCCTTGCGCGGG 496
||||||||.|||.||..|..|||||||||||||.|||||..||||.||.|
RBAM_030510__ 324 GCTTGCCTTTCCCTCCCTCTTGACCGGAAGCATTCTCAGTATTGCACGTG 373
BSNT_04979 497 CGCTCGGAGAATTTGGCGCAACACTCATGTTTGCAGGAAACATCCCCGGT 546
||||.||.|||||.||.||.||..|.||||||||.|||||.||.||||||
RBAM_030510__ 374 CGCTAGGTGAATTCGGGGCGACTTTAATGTTTGCGGGAAATATTCCCGGT 423
BSNT_04979 547 GTTACGCAAACACTGCCGACGGCGATATATGTCGCATTGGATTCCGGCAA 596
||.||.|||||.||||||||.|||||.||.|||||..||||.||||||||
RBAM_030510__ 424 GTCACCCAAACGCTGCCGACAGCGATTTACGTCGCGATGGACTCCGGCAA 473
BSNT_04979 597 CAATACCCTTGCTTGGGCGTGGGTCGTCTGTATTGTAGTCATTTCCTTTT 646
..|.||.||.||.||||.||||||..||||||||||..|||||||.||..
RBAM_030510__ 474 TGAAACACTCGCCTGGGGGTGGGTGATCTGTATTGTGATCATTTCTTTCC 523
BSNT_04979 647 TGATGCTGTTTTTCATTCAACAGAAAAAAACGCACT--AA 684
||||||||||||||||.|||..| |||||||.|.|| |
RBAM_030510__ 524 TGATGCTGTTTTTCATCCAATTG-AAAAAACCCGCTTGA- 561
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