Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04976 and RBAM_030480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_04976___yvgJ.1.9828.seq
# -bsequence dna-align/RBAM_030480___yvgJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04976___yvgJ-RBAM_030480___yvgJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04976___yvgJ-RBAM_030480___yvgJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04976___yvgJ
# 2: RBAM_030480___yvgJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1918
# Identity: 1365/1918 (71.2%)
# Similarity: 1365/1918 (71.2%)
# Gaps: 125/1918 ( 6.5%)
# Score: 4607.5
#
#
#=======================================
BSNT_04976___ 1 ATGAAAGGAACCTTTTTTCA-CAATCAGCGGTTTTTATGTTTTTCGATCT 49
||| |||.||.|.||||||| ||||||.|||||||||||..|.||.|||.
RBAM_030480__ 1 ATG-AAGAAAACCTTTTTCAGCAATCATCGGTTTTTATGCCTGTCCATCC 49
BSNT_04976___ 50 TATTTATGTGGATCAAAACGTATGTGATATATAAACTCGGCTTTGATTTG 99
|.||.||||||||.|||||.||||...|.|||||.|||||.||||||.||
RBAM_030480__ 50 TGTTCATGTGGATGAAAACCTATGCCGTTTATAAGCTCGGTTTTGATCTG 99
BSNT_04976___ 100 CAAATCGATACTCTGT--TGGAGGAGCTAATG-CTGCTGGTC---AACCC 143
||.|.|.|| ||.|| |.|||| |||| |||||..|| ||.||
RBAM_030480__ 100 CAGAACAAT--TCGGTTCTTGAGG----AATGTCTGCTTCTCATTAATCC 143
BSNT_04976___ 144 GCTCAGCTTTATTCTTCCTTTATTCGGGATCGGCCTGCTTCTGAAAGGAA 193
|||.|||||.|||.|.||..|.|||||.||||.||||||.||||.||.||
RBAM_030480__ 144 GCTGAGCTTCATTGTGCCGCTGTTCGGCATCGCCCTGCTGCTGACAGAAA 193
BSNT_04976___ 194 ACAAGCAGCGGGCTTTTTTGCTGATT--GCCAATTTGGTTCTGACTGTTA 241
|.||.||||||...|||.|||| || ||.|||.||.|.|||||.|..|
RBAM_030480__ 194 AAAAACAGCGGATCTTTCTGCT--TTCGGCGAATGTGATGCTGACGGGAA 241
BSNT_04976___ 242 TCTTGATCTCTAATACGATTTTTTACGGCTTTTATATCGATTTTATTACC 291
|.||.|||.|.||||||.|.||||||||.||||||||.||||||||.|||
RBAM_030480__ 242 TTTTAATCGCGAATACGGTGTTTTACGGGTTTTATATTGATTTTATCACC 291
BSNT_04976___ 292 ATTCCGGTTTTATTTCAGGCGAGCAACATGAGCGATATGGGAAGCAGTGT 341
||.||||||||.||||||||||||||.|||.||||||||||||||||.||
RBAM_030480__ 292 ATACCGGTTTTGTTTCAGGCGAGCAATATGGGCGATATGGGAAGCAGCGT 341
BSNT_04976___ 342 AAAAGAATTGTTCCATCCTCTGTTTATCGCCCTGTTTGTGGA-------- 383
..||||..||||.||.||.||.|.||||||..|.|||.||||
RBAM_030480__ 342 CCAAGAGCTGTTTCACCCGCTTTATATCGCTTTATTTTTGGATATTGCGG 391
BSNT_04976___ 384 -TTTGGTTTTTCTGCTGCTGTTCGCCAGAAAAACCAAACACC---CACAG 429
||||.|||.||| ||.| ||||..||.|.|.| .|.||
RBAM_030480__ 392 TTTTGTTTTATCT-----TGGT------AAAAGGCATAAAGCTGGTAAAG 430
BSNT_04976___ 430 ACAAAAGCC-GCTCCCCGCA-CGATCAAACGGTACTAT------GCAGCT 471
.||||||| || .||||.| ||.|.||.|| ||| |||.|.
RBAM_030480__ 431 -GAAAAGCCAGC-ACCCGTACCGTTAAAGCG----TATGCGTGGGCATCA 474
BSNT_04976___ 472 TCCTGCGGCATGCTTTTATGCACACTGGCACTTGCAGAAGTACAGCAGCC 521
.||.||..||||| |.||||..||.||.||..|.||.|...|||||||
RBAM_030480__ 475 GCCGGCCTCATGC---TGTGCAACCTTGCGCTGTCTGAGGCTGAGCAGCC 521
BSNT_04976___ 522 GAAGCTTTTGGCA--CATTCTTTTGACCGGGAAATGCTAGTCAAAAGCAT 569
||||||.|| || ||..|||||||.||.|||..|||.||.|||.|.||
RBAM_030480__ 522 GAAGCTGTT--CAAGCACCCTTTTGATCGTGAAGCGCTCGTAAAAGGAAT 569
BSNT_04976___ 570 CGGCCTGTTTCAGTTCCATATTTACGATACAATTTCTCAGACTGTTAATA 619
|||||||||.||.||.|||.|.||.||.||.|||||.|||||..|.|||
RBAM_030480__ 570 CGGCCTGTTCCACTTTCATTTGTATGACACCATTTCGCAGACGCTGAAT- 618
BSNT_04976___ 620 TCA-GCGCGAAAGCTTTTGCCGATGAAGACAGTATAACTGCCATTAAAAA 668
.|| |.||.|||||.||||||||.||||||||..|..|.||..|...|||
RBAM_030480__ 619 GCAGGGGCTAAAGCGTTTGCCGACGAAGACAGCCTTGCGGCGGTCGCAAA 668
BSNT_04976___ 669 CTACACAGAGGCTGATTACAGCAAGCCTG-----ATCAAAGCAAATTCGG 713
.|||||..|.||.||.|||||||.||| | ||||||| |||||
RBAM_030480__ 669 TTACACTCAAGCCGACTACAGCAGGCC-GTCCGAATCAAAG----TTCGG 713
BSNT_04976___ 714 TCTTGCAAAGGGGCGCAATGTCATCTTTGTAACACTTGAATCGACCCAAA 763
.||.|||||||||||||||||.||.|||||.||.||.|||||.|||||..
RBAM_030480__ 714 GCTCGCAAAGGGGCGCAATGTGATTTTTGTTACGCTCGAATCAACCCAGC 763
BSNT_04976___ 764 GCTTTGTTCTGAATGAAAAAGTAAATGGAAAAGAAATTACCCCATTTATG 813
|.|||||..||.||||....||.||.|||...||.||||||||.|||.|.
RBAM_030480__ 764 GTTTTGTAATGGATGAGCGGGTCAACGGACGGGAGATTACCCCGTTTTTA 813
BSNT_04976___ 814 AATGATCTCATTAAAAAAAGCTATTCCTTTGATCATTTCTATCAGCAAAC 863
|||.|.||....||||||||.|||..|||...||||||.||||||||.||
RBAM_030480__ 814 AATAAACTGCGGAAAAAAAGTTATGACTTCACTCATTTTTATCAGCAGAC 863
BSNT_04976___ 864 AGAACAAGGCAAAACATCAGATTCAGAATTTATCGTCGCTAACTCACTGT 913
.|||||.||.|||||.||||||||||||||.||....||.||.||.||||
RBAM_030480__ 864 TGAACAGGGAAAAACCTCAGATTCAGAATTCATTACTGCGAATTCGCTGT 913
BSNT_04976___ 914 ATCCTTCCCTT--AGCGGCGCCGTCTTTTTCACGAAAAGCGACCATCAAT 961
||||.| ||| |||||||||||.|||||.||.|||||||.|||.|..|
RBAM_030480__ 914 ATCCGT--CTTCAAGCGGCGCCGTTTTTTTTACAAAAAGCGGCCACCGGT 961
BSNT_04976___ 962 TTTATACGATGTA--------TAAATCGCTGAAGCAGCACG--ATTATTA 1001
|..|||||||||| |||| ||..|| |.||.||
RBAM_030480__ 962 TCAATACGATGTACCATATGTTAAA----------AGACCGTCAATACTA 1001
BSNT_04976___ 1002 TTCAGCCGTCTTTCATGCTAACCATAAAACATTTTGGAACAGAGATGTCA 1051
|||||||||..|.|||||.||.||||||.|.|||||||||.|.||||..|
RBAM_030480__ 1002 TTCAGCCGTTCTGCATGCCAATCATAAAGCCTTTTGGAACCGGGATGAGA 1051
BSNT_04976___ 1052 TGTACGATACATTTGGCATTGACCGCTTTTTTGATGTTGATGATTTTCAT 1101
||||||...||||.||.||.|||||.|||||.||.|..|||||.|||.|.
RBAM_030480__ 1052 TGTACGGGGCATTCGGAATCGACCGTTTTTTCGACGCGGATGAATTTAAG 1101
BSNT_04976___ 1102 GTCACTCCCGGGACA--TCGACAAGCTGGGGTTTAAAAGACAAAGAATTT 1149
||.| |.|.|||.| ||.|||.|||||||..|.||.||.||.||.|||
RBAM_030480__ 1102 GTGA--CACAGGAAAATTCAACAGGCTGGGGCCTGAAGGATAAGGAGTTT 1149
BSNT_04976___ 1150 TTAGAGCAGTCCGCCGAAAAGCTGAA-AAGCCTGCCGCAGCCGTTCTACA 1198
.|.||.|||||.||.|||||..|.|| ||| ||.|||||||||||.|||
RBAM_030480__ 1150 CTCGAACAGTCAGCGGAAAAATTAAAGAAG-CTTCCGCAGCCGTTTTAC- 1197
BSNT_04976___ 1199 GC-AGTTTTATCACGTTAACGAATCATTTTCCGTTTGAGATTGATGAAAA 1247
|| ||..|..|.||.||.||.||.||||||||.|||||.||||||.||.|
RBAM_030480__ 1198 GCGAGCCTGCTGACTTTGACCAACCATTTTCCTTTTGAAATTGATAAACA 1247
BSNT_04976___ 1248 GGATCAGCTGATAGATGAATTCGATTCAAGCAGTGATCTGTTAAACCGCT 1297
|||||||||.||.||.|||...||..|||||||.||..|.||||||||||
RBAM_030480__ 1248 GGATCAGCTCATTGAGGAACCGGACACAAGCAGCGAGTTATTAAACCGCT 1297
BSNT_04976___ 1298 ATGTGACCACGGTTCGCTATGAGGATGAGGCATTGAAGCATTTTATCAAA 1347
|||||||.|||||.||||||||.||||||||..||||.||.|||.||||.
RBAM_030480__ 1298 ATGTGACGACGGTCCGCTATGAAGATGAGGCCCTGAAACACTTTTTCAAG 1347
BSNT_04976___ 1348 AAACTGAAGGACGAAGGCTTATACGAAAATTCGATGATCGTATTTATGGG 1397
||.|||||..|.|||||..|.||.||.||..||||||||||..|.|||||
RBAM_030480__ 1348 AAGCTGAAAAAAGAAGGACTGTATGACAACGCGATGATCGTCCTGATGGG 1397
BSNT_04976___ 1398 AGATCATTACGGCATTTCTGAAGCCCATAA-CGAGGCCATGGCTGAGTTT 1446
||||||||||||.||.||.||||||||||| |.|||.| |.||.||.||.
RBAM_030480__ 1398 AGATCATTACGGTATATCCGAAGCCCATAATCAAGGAC-TTGCCGAATTC 1446
BSNT_04976___ 1447 TTAAGGAAAGACGAAATCACACCGTATGACAACGTTCAGCTCCAGCGGGT 1496
|||.|||||||.||||||||.||||.|||.|..||||||||.|||||.||
RBAM_030480__ 1447 TTAGGGAAAGAGGAAATCACTCCGTTTGATACGGTTCAGCTTCAGCGCGT 1496
BSNT_04976___ 1497 GCCGTTTATCATACATA-TCCCGGGAATCACCGATCAACAGCCGGAAACC 1545
||||||||||||.|||| ||||||| .|.|||||.|....|||||||||.
RBAM_030480__ 1497 GCCGTTTATCATTCATATTCCCGGG-GTGACCGACCGTGCGCCGGAAACG 1545
BSNT_04976___ 1546 ATCCCTGATGCCGGGGGACAGGTCGACGTCAGGCCGACGCTGATGCATTT 1595
||..||...||||.|||||||||.||.||.||.|||||||||.|.||..|
RBAM_030480__ 1546 ATTGCTTCGGCCGCGGGACAGGTTGATGTAAGACCGACGCTGCTTCACCT 1595
BSNT_04976___ 1596 GCTCGGCGTTGAGACAAAAGGCGATATCCAATTCGGCAATGATTTGCTGT 1645
|||||||.||||.||.||||||...||.||.||||||||||||.||.|.|
RBAM_030480__ 1596 GCTCGGCATTGAAACGAAAGGCAGCATTCAGTTCGGCAATGATCTGTTTT 1645
BSNT_04976___ 1646 CGGGCGACCGCACCCCATTCGCCGTTCTGCGAAACGGCAGCTTTATTACG 1695
|.||.||.||.||.||.||.||.||.|||.||||||||||||||||.|||
RBAM_030480__ 1646 CCGGAGAGCGGACGCCGTTTGCGGTGCTGAGAAACGGCAGCTTTATCACG 1695
BSNT_04976___ 1696 AACGATTATATATACACAAAGAACACGTGCTATAGCCAAAAAACAGGTGA 1745
.|.|||.||||.||.||.||.||.|||||.||.||||..|||||.|||||
RBAM_030480__ 1696 GATGATCATATTTATACGAAAAATACGTGTTACAGCCGTAAAACGGGTGA 1745
BSNT_04976___ 1746 AGTGCTGGAAGATCAGGA-TGCGTGCCTCCCTTACAAGGAGAAAGC-AAA 1793
|..|||....|| ||.|| .||||||..|..|.|.||.||.||||| .||
RBAM_030480__ 1746 ACCGCTTTCTGA-CATGAGCGCGTGCAGCGATGAGAAAGAAAAAGCGGAA 1794
BSNT_04976___ 1794 CGAAGAACTTTCTCTCTCTGATAAAATTTTAAATGGTGACCTGCTCAGGT 1843
| ||||.||....||.||.||||||||.|||||.||.||||||||..|||
RBAM_030480__ 1795 C-AAGAGCTGATGCTTTCCGATAAAATATTAAACGGCGACCTGCTGCGGT 1843
BSNT_04976___ 1844 TTTCCGAATGA------- 1854
||| ||.|
RBAM_030480__ 1844 TTT----ATAAGCAATAA 1857
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