Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04967 and RBAM_030430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:30
# Commandline: needle
# -asequence dna-align/BSNT_04967___fhuB.1.9828.seq
# -bsequence dna-align/RBAM_030430___fhuB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04967___fhuB-RBAM_030430___fhuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04967___fhuB-RBAM_030430___fhuB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04967___fhuB
# 2: RBAM_030430___fhuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1246
# Identity: 776/1246 (62.3%)
# Similarity: 776/1246 (62.3%)
# Gaps: 224/1246 (18.0%)
# Score: 2675.5
#
#
#=======================================
BSNT_04967___ 1 GTGATTATACCACTGCAAGTGCCGGTTGACACGATATTTTTGCAAATGCA 50
RBAM_030430__ 0 -------------------------------------------------- 0
BSNT_04967___ 51 TTTTCATTTTTGTTCAAAACACTCTATTAAATCAGCTGAAAAAAGTGATA 100
RBAM_030430__ 0 -------------------------------------------------- 0
BSNT_04967___ 101 TACTGAAACAGCAATTGATAATCATTATCAGTAACAGAAAGGAAGTACGG 150
||
RBAM_030430__ 1 --------------------------------------------GT---- 2
BSNT_04967___ 151 CAGTTGAGTCAACATAAAAATATACAGAC---------------TGCATC 185
||||.|||.|...|||||.|.|||||| .|||||
RBAM_030430__ 3 --GTTGGGTCTATTGAAAAAGAAACAGACAATGACGGCTCAAGGGGCATC 50
BSNT_04967___ 186 AG---AAGAAATCCAATGGACGTCAAGGACATATGGCGCGGTCATCGTC- 231
|| ..||||||||.||||| ||||||.|||| ||
RBAM_030430__ 51 AGGGAGTGAAATCCAGTGGAC-------------GGCGCGTTCAT--TCC 85
BSNT_04967___ 232 ------CTTATTGCAGGTCTATGCCTGCTTTGC----------CTTGGCG 265
|| .|||.|.|.|.||||.|..|||| .|.||||
RBAM_030430__ 86 GGGCGGCT--GTGCTGCTGTGTGCCGGGATTGCGGTTTTATTGATCGGCG 133
BSNT_04967___ 266 CATTTTTATCCATATCCCTCGGTGCAGCGGATATTCATTTGCGCACTGTA 315
|...|.|.||..|.|||.||||.||.||.|||||||||.||||.||.||.
RBAM_030430__ 134 CGGCTCTGTCTGTTTCCATCGGAGCTGCCGATATTCATCTGCGGACGGTG 183
BSNT_04967___ 316 TGGGACGCCATTTTTTA-TTTCAAGCCGACAAAGACATCTCACCAAATTA 364
|||||.||..|.|||.| |||| |||||..|||.||||||||.|||||.|
RBAM_030430__ 184 TGGGATGCTCTCTTTCACTTTC-AGCCGCAAAATACATCTCATCAAATCA 232
BSNT_04967___ 365 TACATGATCTTCGGCTGCCGAGAACGGCGGCTGCCGCGCTTGTAGGCGCA 414
|||..|||||..|||||||||||||.||.||.||||||||.||.||.||.
RBAM_030430__ 233 TACGCGATCTGAGGCTGCCGAGAACCGCTGCCGCCGCGCTCGTCGGGGCT 282
BSNT_04967___ 415 TTGTTGGCAGTGTCGGGAGCAATCATGCAGGGGATGACGAGAAACCCTTT 464
||.||.||.|||||.||.||.||.|||||||||.|||||.|.|||||..|
RBAM_030430__ 283 TTTTTAGCTGTGTCCGGGGCGATTATGCAGGGGCTGACGCGGAACCCGCT 332
BSNT_04967___ 465 GGCAGAGCCTTCGATTATGGGTGTGACATCAGGCTCTGCGTTTGCGGTTT 514
.||.||||||||.||||||||.|||||.||.||.||.|..|||||| .|
RBAM_030430__ 333 TGCTGAGCCTTCCATTATGGGCGTGACGTCGGGGTCAGGATTTGCG--AT 380
BSNT_04967___ 515 CG-ATT-GCGTTTGCCTTTTTTCCCGGACTTTCTGCAATGGGGCTTGTGC 562
|| ||| ||||||||.||||||||.||.||.|||||....||||||||..
RBAM_030430__ 381 CGCATTGGCGTTTGCTTTTTTTCCGGGGCTCTCTGCCGCTGGGCTTGTTT 430
BSNT_04967___ 563 TATGGTCCTTTGCGGGAGCGGGGCTGGGGGC----ATCGACGGTAATGGG 608
|.||||||||||||||||||||..|.||.|| || .||..|.||
RBAM_030430__ 431 TGTGGTCCTTTGCGGGAGCGGGAATCGGAGCGCTTAT----TGTGTTTGG 476
BSNT_04967___ 609 CATCGGCTTGTTTTCAAGGGGCGGACTTACGCCTGTAAAGCTTGCTCTGG 658
|||||||.|||||||||..|||||.||.||.||.||.|||||.||.||||
RBAM_030430__ 477 CATCGGCCTGTTTTCAAAAGGCGGTCTGACACCGGTGAAGCTCGCGCTGG 526
BSNT_04967___ 659 CGGGTACGGCAGTTACTTATTTCTTTACCGGCATTTCAACTGCCATTGCA 708
|.|||||||||||....||||||||.||.||..||||||..||.|||||.
RBAM_030430__ 527 CCGGTACGGCAGTCGGCTATTTCTTAACGGGGCTTTCAAGCGCGATTGCG 576
BSNT_04967___ 709 ATTCGCTTTGATGTCGCTCAGGATATCAGCTTTTGGTACGCAGGCGGGGT 758
||.||.|||||||||||.||||||.|.|..||.|||||.||.||.||.||
RBAM_030430__ 577 ATCCGTTTTGATGTCGCCCAGGATGTGAAGTTCTGGTATGCCGGAGGAGT 626
BSNT_04967___ 759 AGCGGGTGTGAAATGGCCGGGGGTCCAGCTTTTGTTTATTGCAGGGGCTG 808
.||....|||||||||...||.||.|||||..||||....|..||||.|.
RBAM_030430__ 627 CGCTTCCGTGAAATGGGAAGGCGTGCAGCTGCTGTTGGCGGTCGGGGTTA 676
BSNT_04967___ 809 TCGG---TTTAACGCTTGCGTTTTTCATCGCCCGGTCTGTGACAGTGTTG 855
|||| ||| |||.||.|||.|.||.||.||.||.|||||.|||.||
RBAM_030430__ 677 TCGGACTTTT---GCTGGCATTTCTGATTGCGCGCTCAGTGACGGTGCTG 723
BSNT_04967___ 856 AGTCTCGGTGACGATCTGGCAAAAGGGCTTGGACAATATACATCAGC-AG 904
||..|.|||||.||.|||||.||||||||.||.||.||.||||| || .|
RBAM_030430__ 724 AGCTTGGGTGAGGAGCTGGCCAAAGGGCTCGGGCAGTACACATC-GCTTG 772
BSNT_04967___ 905 TGAAACTGGTGGGCATGCTTATTGTAGTAATTCTGACCGGAGCTGCGGTT 954
|||||.|..|.||.|||.||.|.||.||..|..||||.||.|||.|.||.
RBAM_030430__ 773 TGAAAGTAATCGGAATGTTTGTCGTTGTCCTCTTGACGGGGGCTTCAGTC 822
BSNT_04967___ 955 TCCATTGCCGGCACCATTGCATTTATCGGGCTGATTATTCCGCATATTAC 1004
||..|.|||||..|||||.|.||||||||..||.|.|||||||||||.||
RBAM_030430__ 823 TCAGTCGCCGGAGCCATTTCTTTTATCGGCTTGGTGATTCCGCATATCAC 872
BSNT_04967___ 1005 CCGTTTTTTGGTCGGTGTGGATTATCGGTGGATCATTCCTTGCTCGGCGG 1054
|||.|||||.|||||.||.|||||..|||||||||||||.||.|||||||
RBAM_030430__ 873 CCGATTTTTAGTCGGGGTAGATTACAGGTGGATCATTCCCTGTTCGGCGG 922
BSNT_04967___ 1055 TGCTCGGTGCTGTTTTGCTTGTTTTTGCTGACATAGCGGCCAGACTCGTA 1104
|..||||.||.|||.||.|.||.||...|||.||.||.||.||||||||.
RBAM_030430__ 923 TATTCGGCGCCGTTCTGTTAGTCTTCAGTGATATTGCCGCAAGACTCGTC 972
BSNT_04967___ 1105 AATGCGCCCTTTGAGACGCCTGTCGGCGCGCTGACTTCTCTGATCGGCGT 1154
||||||||.|||||.||.||.||||||||..|.||..|.||.||||||||
RBAM_030430__ 973 AATGCGCCGTTTGAAACACCGGTCGGCGCTTTAACCGCCCTTATCGGCGT 1022
BSNT_04967___ 1155 TCCCTTTTTCTTTTATTTGGCACGTCGTGAAAGGAGAGGGCTGTAA 1200
|||||||||||||||||||||.||..|.||||||||||||||||||
RBAM_030430__ 1023 TCCCTTTTTCTTTTATTTGGCGCGCAGGGAAAGGAGAGGGCTGTAA 1068
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