Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04956 and RBAM_030390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_04956___oxdC.1.9828.seq
# -bsequence dna-align/RBAM_030390___oxdC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04956___oxdC-RBAM_030390___oxdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04956___oxdC-RBAM_030390___oxdC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04956___oxdC
# 2: RBAM_030390___oxdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1181
# Identity: 904/1181 (76.5%)
# Similarity: 904/1181 (76.5%)
# Gaps: 43/1181 ( 3.6%)
# Score: 3404.0
#
#
#=======================================
BSNT_04956___ 1 ATGAAAAAACAAAATGAC------ATTCCGCAGCCAATTAGAGGAGACAA 44
|||..||||.|||||.|| ||.||||||||.||.|||||||||||
RBAM_030390__ 1 ATGTCAAAAGAAAATAACTGCAATATCCCGCAGCCGATCAGAGGAGACAA 50
BSNT_04956___ 45 AGGAGCAACGGTAAAAATCCCGCGCAATATTGAAAGAGACCGGCAAAACC 94
|||.||.||.||.|..||.||||||||..|||||||||||||.|||||.|
RBAM_030390__ 51 AGGGGCGACCGTCACGATTCCGCGCAACCTTGAAAGAGACCGCCAAAATC 100
BSNT_04956___ 95 CTGATATGCT--CGTTCCGCCTGAAACCGATCATGGCACCGTCAGCAATA 142
|.|||||||| || |||||.|||||.|||||.|||||.||....||||
RBAM_030390__ 101 CGGATATGCTGACG--CCGCCGGAAACGGATCACGGCACAGTGGATAATA 148
BSNT_04956___ 143 TGAAGTTTTCGTTCTCTGATACTCATAACCGATTAGAAAAAGGCGGATAT 192
||||.||.||.|||||.|||...||.|||||..|.|||||.||||||||.
RBAM_030390__ 149 TGAAATTCTCTTTCTCAGATGTGCACAACCGGCTGGAAAAGGGCGGATAC 198
BSNT_04956___ 193 GCCCGTGAAGTGACAGTACGTGAATTGCCGATTTCAGAAAACCTTGCATC 242
||.|||||.|||||.||.||.||..||||||||||.|||||.||.|||||
RBAM_030390__ 199 GCGCGTGAGGTGACCGTTCGCGAGCTGCCGATTTCTGAAAATCTGGCATC 248
BSNT_04956___ 243 CGTAAATATGCGGCTGAAGCCAGGTGCGATTCGCGAGCTTCACTGGCATA 292
.||.||.|||||..|.||.||.||.||.||.||.|||||.||||||||||
RBAM_030390__ 249 TGTCAACATGCGTTTAAAACCGGGCGCCATCCGTGAGCTGCACTGGCATA 298
BSNT_04956___ 293 AAGAAGCTGAATGGGCTTATATGATTTACGG---AAGTGCAAGAGTCACA 339
|||||||.||||||||.|||||| .|.|||| |||.|| |.|||||.
RBAM_030390__ 299 AAGAAGCGGAATGGGCATATATG-CTGACGGGCAAAGCGC--GGGTCACG 345
BSNT_04956___ 340 ATTGTAGATGAAAAAGGGCGCAGCTTTAT---TGACGATGTAGGTGAAGG 386
|||||.||||||.|.||.|||||.||||| ||||| ||.|| |||||
RBAM_030390__ 346 ATTGTTGATGAACAGGGACGCAGTTTTATCGATGACG-TGAAG--GAAGG 392
BSNT_04956___ 387 AGACCTTTGGTACTTCCCGTCAGGCCTGCCGCACTCCATCCAAGCGCTGG 436
|||.||.||||||||||||||||||||||||||||||||.||.||||||.
RBAM_030390__ 393 AGATCTGTGGTACTTCCCGTCAGGCCTGCCGCACTCCATTCAGGCGCTGA 442
BSNT_04956___ 437 AGGAGGGAGCTGAGTTCCTGCTCGTATTTGACGATGGATCATTCTCTGAA 486
|.||.||...|||.|||||..|.||.|||||.||.||.||.|||||.|||
RBAM_030390__ 443 AAGAAGGCTGTGAATTCCTCTTGGTTTTTGATGACGGTTCTTTCTCAGAA 492
BSNT_04956___ 487 AACAGCACGTTCCAGCTGACAGATTGGCTGGCCCACACTCCAAAAGAAGT 536
||||||||.|||||..||||.||.|||||.||||||||.||....||.||
RBAM_030390__ 493 AACAGCACATTCCAAGTGACTGACTGGCTTGCCCACACACCGCTTGATGT 542
BSNT_04956___ 537 CATTG-CTGCGAACTTTGGCGTGACAAAAGAAGAGATTGCCAATTTACCT 585
||||| |.|| |||||.||.||..||.||.||||..|.|||....|.||.
RBAM_030390__ 543 CATTGCCAGC-AACTTCGGGGTTTCAGAAAAAGACCTCGCCGGCCTGCCC 591
BSNT_04956___ 586 GGCAAAGAAAAATATATATTTGAAAACCAACTTCCTGGCAGTTTAAAAGA 635
||.||||||||||||||.||||||.|.|...||||.||.|...|.|||||
RBAM_030390__ 592 GGGAAAGAAAAATATATCTTTGAAGAGCCGGTTCCCGGGAAGCTGAAAGA 641
BSNT_04956___ 636 TGATATTGTGGAAGGGCCAAATGGCGAAGTGCCTTATCCATTTACTTACC 685
|||.|||||||||||.||.||.||.||||||||||||||.||.|||||||
RBAM_030390__ 642 TGACATTGTGGAAGGCCCGAACGGTGAAGTGCCTTATCCGTTCACTTACC 691
BSNT_04956___ 686 GACTTCTTGAACAAGAGCCGATCGAAT-CTGAG------GGAGGAAATGT 728
|.||.||.||..||| ||| |||.| ||||| ||.||.||.||
RBAM_030390__ 692 GCCTGCTGGATGAAG-GCC---CGACTGCTGAGACGGATGGCGGCAAAGT 737
BSNT_04956___ 729 ATACATTGCAGATTCGACAAACTTCAAAGTGTCTAAAACCATCGCATCAG 778
|||.||.||.|||||.|||||||||||||||||.|||||.|||||.||||
RBAM_030390__ 738 ATATATCGCGGATTCCACAAACTTCAAAGTGTCCAAAACGATCGCTTCAG 787
BSNT_04956___ 779 CGCTCGTAACAGTAGAACCCGGCGCCATGAGAGAACTGCACTGGCATCCG 828
||||.||....||.|||||.|||||.||||||||.|||||||||||||||
RBAM_030390__ 788 CGCTTGTCGTGGTCGAACCGGGCGCAATGAGAGAGCTGCACTGGCATCCG 837
BSNT_04956___ 829 AATACCCACGAATGGCAATACTACATCTCCGGTAAAGCTAGAATGACCGT 878
||.||.||.||||||||.||.||.||.||||||||||...|.|||||.||
RBAM_030390__ 838 AACACGCATGAATGGCAGTATTATATTTCCGGTAAAGGGCGGATGACGGT 887
BSNT_04956___ 879 TTTTGCATCTGACGGCCATGCCAGAACGTTTAATTACCAAGCCGGTGATG 928
|||||||||.|||||||||||.|||||.|||||.||.||.|||||.||||
RBAM_030390__ 888 TTTTGCATCAGACGGCCATGCAAGAACATTTAACTATCAGGCCGGGGATG 937
BSNT_04956___ 929 TCGGATATGTACCATTTGCAATGGGTCATTACGTTGAAAACATCGGGGAT 978
||||.||.||.||.||.||||||||.||.||.||.||.||..|.||.|||
RBAM_030390__ 938 TCGGTTACGTTCCGTTCGCAATGGGCCACTATGTGGAGAATTTGGGAGAT 987
BSNT_04956___ 979 GAACCGCTTGTCTTTTTAGAAATCTTCAAAGACGACCATTATGCTGATGT 1028
||.|||||.|||||..|.|||||||||||.||.|||||.|||||.|||||
RBAM_030390__ 988 GAGCCGCTCGTCTTCCTGGAAATCTTCAAGGATGACCACTATGCCGATGT 1037
BSNT_04956___ 1029 ATCTTTAAACCAATGGCTTGCCATGCTTCCTGAAACATTTGTTCAAGCA- 1077
.||..|.||||||||||||||||||||||||||.|.|||.| ||.||||
RBAM_030390__ 1038 GTCCCTGAACCAATGGCTTGCCATGCTTCCTGAGAAATTCG-TCCAGCAG 1086
BSNT_04956___ 1078 CACCTTGACTTGGGCAAAGACTTTACTGATGTGCTTTCAAAAGAAAAGCA 1127
||.||.||..||||||||||||||||.|||.|.|||||.|||||.||.||
RBAM_030390__ 1087 CATCTGGATCTGGGCAAAGACTTTACGGATATTCTTTCGAAAGAGAAACA 1136
BSNT_04956___ 1128 CCCAGTAGTGAAAAAGAAATGCAGTAAATAA 1158
|||.||.||.||||||||||||.|.
RBAM_030390__ 1137 CCCTGTCGTCAAAAAGAAATGCTGA------ 1161
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