Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04952 and RBAM_030370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:29
# Commandline: needle
# -asequence dna-align/BSNT_04952___yvrI.1.9828.seq
# -bsequence dna-align/RBAM_030370___yvrI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04952___yvrI-RBAM_030370___yvrI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04952___yvrI-RBAM_030370___yvrI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04952___yvrI
# 2: RBAM_030370___yvrI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 660
# Identity: 447/660 (67.7%)
# Similarity: 447/660 (67.7%)
# Gaps: 102/660 (15.5%)
# Score: 1684.5
#
#
#=======================================
BSNT_04952___ 1 ATGGACTATCAAAGTCTTTTACGGTCAAAATGTAAGGAGATAATGAAGCA 50
||||||||||||..||||||||||||||||||.|||||.||.|||||.||
RBAM_030370__ 1 ATGGACTATCAAGTTCTTTTACGGTCAAAATGCAAGGAAATTATGAAACA 50
BSNT_04952___ 51 TCCCATCGTGAAGCATTTTTTGAGCAATCCTCAGCATTACCGTTTG---- 96
|||.|||||.||.||||||||.||..|.||..|||||||| |
RBAM_030370__ 51 TCCGATCGTTAAACATTTTTTAAGTGACCCAAAGCATTAC-----GAGAA 95
BSNT_04952___ 97 -TTCAAAAACGTAATGGAA-----AGCCCTAACGAAAAAGATGCAAAATC 140
||.|||||.||..||||| || ||||.||.|||||||||||
RBAM_030370__ 96 ATTTAAAAATGTGCTGGAACATTCAG-----ACGAGAAGGATGCAAAATC 140
BSNT_04952___ 141 ATTGGACGAGCTATTTAAGCAGTTTTATAAAGAAATCCGCATCGTCAAGT 190
|.|||||||.|..|||||.|||||||||||.||||||||.|||.||||.|
RBAM_030370__ 141 ACTGGACGACCATTTTAAACAGTTTTATAAGGAAATCCGGATCATCAAAT 190
BSNT_04952___ 191 ATATGAATTCAATGATTCGCATCTTTTCTATTGATTTTGATAAGCGGGTT 240
|||||||.||.|||||.||.||.||.||.||.||||||||.|||||..|.
RBAM_030370__ 191 ATATGAACTCTATGATCCGGATTTTCTCCATCGATTTTGACAAGCGCATC 240
BSNT_04952___ 241 CGCAAAAACCAAAAACGGTATCCGCTGACGGTTGATCATCCGGAGGCGGG 290
||.|||||.||.||.||.||||||||||||||.|||||.|||||||..||
RBAM_030370__ 241 CGTAAAAATCAGAAGCGCTATCCGCTGACGGTGGATCAGCCGGAGGGAGG 290
BSNT_04952___ 291 AGATCGGCTTCCTTCCGAAACAGGTAGCGATGCATTTGAAGAATTTTTAG 340
.||...||||||.|..||||..||.|..||.||.|.||||||.|||.|..
RBAM_030370__ 291 TGAAGCGCTTCCCTATGAAATGGGAAAAGACGCGTATGAAGAGTTTCTGC 340
BSNT_04952___ 341 ACAGGCAGGATGATTTGAGCCAGCATGTACA------GGATTACCAGCTC 384
..|.|||||..|||||||||||||||||.|| .|||| |.
RBAM_030370__ 341 GGAAGCAGGGGGATTTGAGCCAGCATGTCCAAAACCGTGATT------TA 384
BSNT_04952___ 385 TACCAAGCGATCCAGAAGCTGACTGACAAACAAAAAAGTGTGCTGACGAA 434
|||.|||||.|.||||.|.|.||.||.|||||||||||.|||||||||||
RBAM_030370__ 385 TACGAAGCGCTTCAGACGTTAACCGATAAACAAAAAAGCGTGCTGACGAA 434
BSNT_04952___ 435 AGTCTATCTTCACGGTGCCACGATGCAGGAGATTGCAGATTCATTAGGGG 484
..|.|||||||||||.||.||||||.||||||||||.||.||..|.||.|
RBAM_030370__ 435 TATTTATCTTCACGGAGCGACGATGAAGGAGATTGCCGAGTCGCTGGGTG 484
BSNT_04952___ 485 AGTCCCGACAAAACATTTCCAACATTCATAAAAAGGGGCTGGAGAATATC 534
|.||.||.||.|||||||||||.|||||||||||.|||||.||.|||.||
RBAM_030370__ 485 AATCACGGCAGAACATTTCCAATATTCATAAAAAAGGGCTCGACAATCTC 534
BSNT_04952___ 535 AGAAAGCAGCT-----AGCGGCGCAAAAAAGGGGGAAAAGTAAGCTGTGG 579
||||||||||| ||| .||||||||||||||| |||||.|||.
RBAM_030370__ 535 AGAAAGCAGCTGGACAAGC----AAAAAAAGGGGGAAAA-TAAGCAGTGA 579
BSNT_04952___ 580 ACGGCCAGTTTGAACAAAAAAAGAAACAAAAAGACGAGACTTATGACATT 629
RBAM_030370__ 579 -------------------------------------------------- 579
BSNT_04952___ 630 GAGCATCTGA 639
RBAM_030370__ 579 ---------- 579
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