Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04946 and RBAM_030330

See Amino acid alignment / Visit BSNT_04946 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:29
# Commandline: needle
#    -asequence dna-align/BSNT_04946___yvrE.1.9828.seq
#    -bsequence dna-align/RBAM_030330___yvrE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04946___yvrE-RBAM_030330___yvrE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04946___yvrE-RBAM_030330___yvrE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04946___yvrE
# 2: RBAM_030330___yvrE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 895
# Identity:     666/895 (74.4%)
# Similarity:   666/895 (74.4%)
# Gaps:          32/895 ( 3.6%)
# Score: 2403.5
# 
#
#=======================================

BSNT_04946___      1 ATGGATGCAGTATTGGAAGCAGACACTCGGGCAGTGATTGGAGAAGGCCC     50
                     |||||.||||.|||...||||||.||..|.|||||.||.|||||||||||
RBAM_030330__      1 ATGGAAGCAGCATTACGAGCAGATACGAGAGCAGTTATCGGAGAAGGCCC     50

BSNT_04946___     51 GTTATGGGATGAAGAAAACGGC--CGCTTATATTGGGTTGATATCCTGGG     98
                     .||||||||..|.||.||  ||  .||.|.||.|||||.|||||.|||||
RBAM_030330__     51 TTTATGGGACAAGGATAA--GCAATGCCTGTACTGGGTGGATATACTGGG     98

BSNT_04946___     99 GAGCGAGCTCCATATCTT---TGACC--CTGAAGAAAAAATCAACCGATC    143
                     .|||.||||.||||||||   |  ||  ||||.|   .|||||||||.||
RBAM_030330__     99 CAGCCAGCTGCATATCTTCACT--CCGGCTGACG---GAATCAACCGTTC    143

BSNT_04946___    144 AATCAAATTCAAATCCTTTGTGACGGCGCTTGCGAAATATTCAAAGGATG    193
                     ..|.|||||||||||.|||||.|||||.||.||....|||||||||||.|
RBAM_030330__    144 CGTTAAATTCAAATCATTTGTCACGGCTCTGGCCTTGTATTCAAAGGAAG    193

BSNT_04946___    194 AACTGATTATGACGATGAAGGACGGGTTTTACCTGTATCATCTTCGGGAT    243
                     |.|||.|.|||||||||||.|||||.|||||||||||..||||||||||.
RBAM_030330__    194 AGCTGGTGATGACGATGAAAGACGGTTTTTACCTGTACAATCTTCGGGAA    243

BSNT_04946___    244 GACAGCTTGGAAAAAATTAAACAGCCGAAGGACATGC---ATGAGAGCCT    290
                     ||||..|||...||.||.||.||||||||.|||||||   |.||.|.|| 
RBAM_030330__    244 GACACATTGACGAAGATGAAGCAGCCGAAAGACATGCGGGAAGATATCC-    292

BSNT_04946___    291 GAGATTTAATGATGCTAAATGTGACCCGTACGGAAGGCTTTGGGCGGGGA    340
                       |.||.|||||.||.|||||.|||||||.|||.||..|.||||||||.|
RBAM_030330__    293 --GTTTCAATGACGCAAAATGCGACCCGTCCGGCAGATTATGGGCGGGAA    340

BSNT_04946___    341 CGACGAGCATGGAAGGCGAGCAAAAACAGGCGTCGCTGTACCGTTTGAAT    390
                     |||||||||||||||||.|..||.|..||||.||||||||||||.|||||
RBAM_030330__    341 CGACGAGCATGGAAGGCAAAGAAGAGGAGGCTTCGCTGTACCGTCTGAAT    390

BSNT_04946___    391 CTAGACGGCAGTCTTGTCAAAATCAAGGATCAAGTCTCCACCTCAAACGG    440
                     ...||||||||.||||.||||||.||.||.||.|||||||||||.|||||
RBAM_030330__    391 ACGGACGGCAGCCTTGCCAAAATAAAAGACCAGGTCTCCACCTCGAACGG    440

BSNT_04946___    441 TTTGGATTGGGACCGCGAGCGGAATTTGATGTATTACATCGACACGCCGA    490
                     ||||||||||||.||.||.||.||..|||||||.||.||||||||.||||
RBAM_030330__    441 TTTGGATTGGGATCGGGACCGAAACCTGATGTACTATATCGACACTCCGA    490

BSNT_04946___    491 CCCAGGAGATTGTACGTTA--CAGCTATGATCCTCAAAGCGGGGATGTTT    538
                     |.|||||.||.||..||||  ||  ||.||||||.|||.|||||..||.|
RBAM_030330__    491 CGCAGGAAATCGTCTGTTATGCA--TACGATCCTGAAACCGGGGCCGTAT    538

BSNT_04946___    539 CGAATCCAGAACCTGTCTATCGTTTTGATCAGTCAGACGGATTGCCGGAC    588
                     |..||||..||.|.|||||.||.|||....||||..|.||||..||.|||
RBAM_030330__    539 CAGATCCGAAAACGGTCTACCGCTTTCCGGAGTCGCAAGGATCTCCCGAC    588

BSNT_04946___    589 GGCATGACAATTGACCAAAATGGCATGCTGTGGGTGGCGCTGTTTGGCGG    638
                     ||.|||||.|||||||...|.||.||||||||||||||.|||||.||.||
RBAM_030330__    589 GGAATGACCATTGACCGTGACGGAATGCTGTGGGTGGCTCTGTTCGGAGG    638

BSNT_04946___    639 CAGCCGCGTTGTTCACATTGACCCGTTTCAGAAAAAAGAAAT--CAATTC    686
                     |.||||.|..||.|..||||||||||||..|.|.||.|||||  ||  ||
RBAM_030330__    639 CGGCCGTGCCGTCCGGATTGACCCGTTTTTGCATAAGGAAATTGCA--TC    686

BSNT_04946___    687 AATCAGCGTGCCGGCTAAATATGTCACGTGCTGCGCGTTCGGCGGCAGAG    736
                     .|||...||.|||||.|||||.|||||.||||||||||||||.|||||||
RBAM_030330__    687 TATCGAAGTTCCGGCGAAATACGTCACCTGCTGCGCGTTCGGAGGCAGAG    736

BSNT_04946___    737 ACTTAAAAACCCTTTACATTACAACGGCAACAGAACAAATGACAGAAAAA    786
                     |||||||.||..|.||||||||.||.||.||.|||.||.||||.|||...
RBAM_030330__    737 ACTTAAACACGTTATACATTACGACCGCGACGGAAAAATTGACGGAAGCC    786

BSNT_04946___    787 GAGAGATACGAGCAGCCTCACGCTGGAGGGTTGTTTTCAGCACAACTGGA    836
                     ||.|||...||||||||.||.||.||.||..|||||||||||.|.||.||
RBAM_030330__    787 GAAAGACTTGAGCAGCCGCATGCGGGCGGCCTGTTTTCAGCAGAGCTTGA    836

BSNT_04946___    837 AACAGGCGGATATCAGCCGGTACCATTTGCTGG--AGACGTATAA    879
                     .||.|||||.|...|||||||.||.|||||.||  .||.|||.  
RBAM_030330__    837 GACGGGCGGCTGGGAGCCGGTTCCGTTTGCAGGCATGATGTAA--    879


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04946 and RBAM_030330

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
