Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04937 and RBAM_030280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04937___yvqK.1.9828.seq
# -bsequence dna-align/RBAM_030280___yvqK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04937___yvqK-RBAM_030280___yvqK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04937___yvqK-RBAM_030280___yvqK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04937___yvqK
# 2: RBAM_030280___yvqK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 651
# Identity: 413/651 (63.4%)
# Similarity: 413/651 (63.4%)
# Gaps: 114/651 (17.5%)
# Score: 1341.5
#
#
#=======================================
BSNT_04937___ 1 ------------------------------------ATGAAACTATATAC 14
|||||.||.|||||
RBAM_030280__ 1 ATGTGTAAAAGCGGCGGAAGAAGGAGGAATACAACGATGAAGCTGTATAC 50
BSNT_04937___ 15 AAAAACAGGCGATAAGGGACAAACGGGCTTAGTCGGGGGCAGGACGGACA 64
.|||||.||||||||.|||||.||..||.|..||||.|||||.|||||.|
RBAM_030280__ 51 GAAAACCGGCGATAAAGGACAGACAAGCCTGATCGGCGGCAGAACGGATA 100
BSNT_04937___ 65 AGGACAGCCTGCGCGTCGAAAGCTACGGCACGATTGACGAGCTTAACAGC 114
|.|||||.|||||.||.|||||||||||.||||||||.|||||.||||||
RBAM_030280__ 101 AAGACAGTCTGCGGGTTGAAAGCTACGGGACGATTGATGAGCTGAACAGC 150
BSNT_04937___ 115 TTTATCGGGCTTGCTTTGGCAGAGCTTTCCGGGCAGCTCGGCTTTGAA-- 162
||||||||||||||..|.||.|||||| |..|.|.| |..|||
RBAM_030280__ 151 TTTATCGGGCTTGCGCTTGCGGAGCTT-----GATGATTG--TGAGAATT 193
BSNT_04937___ 163 -----GATCTGACAGCCGAGCTGCTGACTATCCAGCATGAGCTGTTTGAC 207
|||.|||.||||||.||.|..|..||.||||||||||||||||||
RBAM_030280__ 194 GCGGTGATGTGAAAGCCGAACTCCGAAACATTCAGCATGAGCTGTTTGAC 243
BSNT_04937___ 208 TGCGGAGGCGATCTGGCAATCGTCACAGAA-AGAAAAGACTATAAACTAA 256
|||||.|||||..||||.|..|||||.||| |.|.||| |||||.|.|||
RBAM_030280__ 244 TGCGGCGGCGACTTGGCGACGGTCACTGAACATAGAAG-CTATACATTAA 292
BSNT_04937___ 257 CGGA-AGA-ATCTGTTTCTTTTTTAGAAACACGCATTG-----ATGCCTA 299
|| ||| ||||.|||| ||||||| .|||.||
RBAM_030280__ 293 --GAGAGACATCTATTTC-------------CGCATTGGAAGACTGCATA 327
BSNT_04937___ 300 ------TACA--GCAGAAGCGCCGGAACTGAAGAAATTTATTCTTCCAGG 341
|||| ||.||||||||....||..||||||||||||||||.||
RBAM_030280__ 328 GACCGTTACACGGCTGAAGCGCCCCCGCTTGAGAAATTTATTCTTCCGGG 377
BSNT_04937___ 342 CGG--ATCAAAGGGTGCTTCGCTTCTCCATATCGCACGCACCATTACAAG 389
||| || ||||..|||.|.|..||.||.|||||.||.|||.|.||.||
RBAM_030280__ 378 CGGGCAT--AAGGCGGCTGCTCAGCTTCACATCGCGCGGACCGTCACGAG 425
BSNT_04937___ 390 GCGGGCAGAACGAAGAGTGGT-------GGCGCTGATGAAATCGGAGGAG 432
.|||||.||.||....||.|| ||| |||.|.||.|||
RBAM_030280__ 426 ACGGGCTGAGCGTCTCGTCGTGAAACTCGGC-------AAAACAGAAGAG 468
BSNT_04937___ 433 ATTCATGAAACAGTGCTGCGTTATCTCAATCGTCTGTCCGATTATTTCTT 482
||..|.||.||.|||.|||||||..|.||.||.|||||.||||||||.||
RBAM_030280__ 469 ATAAACGATACGGTGATGCGTTACTTGAACCGCCTGTCTGATTATTTTTT 518
BSNT_04937___ 483 TGCCGCCGCCCGGGTTGTAAATGCAAGA-AGCGGTATTGGCGATGTAGAA 531
.||.||.||..|.|..||.||.|||||| || ||..||...|||.|||||
RBAM_030280__ 519 CGCGGCGGCAAGAGCAGTTAACGCAAGACAG-GGCGTTCAGGATATAGAA 567
BSNT_04937___ 532 TATGAAAGAAGTGCCATTGTGTTTCGGGACCGAAACAGCAGTGAATCATA 581
|||||||||||.|||...||.||.||.|| .|| |||||.|
RBAM_030280__ 568 TATGAAAGAAGCGCCGCGGTATTCCGTGA-TGA--------TGAATAA-- 606
BSNT_04937___ 582 A 582
RBAM_030280__ 606 - 606
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