Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04935 and RBAM_030270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04935___yvqJ.1.9828.seq
# -bsequence dna-align/RBAM_030270___yvqJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04935___yvqJ-RBAM_030270___yvqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04935___yvqJ-RBAM_030270___yvqJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04935___yvqJ
# 2: RBAM_030270___yvqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1314
# Identity: 938/1314 (71.4%)
# Similarity: 938/1314 (71.4%)
# Gaps: 90/1314 ( 6.8%)
# Score: 3218.5
#
#
#=======================================
BSNT_04935___ 1 ATGG-TGAATTTAATTGAA-AGTGATAGCATCTGGAAGAGAAATTTCAAT 48
|||| |..||.|||| || ||.||.|||||||||||.|.||||||||..
RBAM_030270__ 1 ATGGATACATATAAT--AAGAGCGAGAGCATCTGGAATAAAAATTTCACC 48
BSNT_04935___ 49 TATCTGTTTTTCTCAAGAATAGTCAAGATATCCGGCGATATGTTCGCATT 98
..|||||||.|||||||..|.||.||..|.||.|||||....||.||.||
RBAM_030270__ 49 CTTCTGTTTATCTCAAGGCTGGTTAAATTGTCAGGCGACGGTTTTGCCTT 98
BSNT_04935___ 99 TAATTCAATATTATGGTTTTTAATTTATGACGGCAAAGGTGCGATCGGCA 148
||||||.||..|.||||||||.||||.||||||..||||.||||||||||
RBAM_030270__ 99 TAATTCCATTCTGTGGTTTTTGATTTTTGACGGGGAAGGCGCGATCGGCA 148
BSNT_04935___ 149 -----CTGCTTTATTGATTGCTGTCACGTTTTTGCCGGAAGCCGTTCTGG 193
|||| |.|||||.||||||||..|.|||||.||..|.||||
RBAM_030270__ 149 CGTCCCTGC-----TCATTGCGGTCACGTTCCTTCCGGAGGCGATGCTGG 193
BSNT_04935___ 194 CGCCTGTGACGGGGCCTTTTATGAAACAGACCACGCTGAAATTCTGGATG 243
||||..|.||.||||||||||||||.|||...||||||||||||||||||
RBAM_030270__ 194 CGCCGATTACCGGGCCTTTTATGAAGCAGCATACGCTGAAATTCTGGATG 243
BSNT_04935___ 244 TACTTTTCAGATCTGACAAGGGCGGCGATTGTTTTGATTATCCCTCTATG 293
||.||.||.||.|||||..|.||||||.|.||.|||||.||.||..|.||
RBAM_030270__ 244 TATTTCTCCGACCTGACGCGCGCGGCGGTCGTGTTGATCATTCCGGTCTG 293
BSNT_04935___ 294 TCATTTTGCGGGCTTCTCTCCGCTGTGGTTTGTCATGACACTTATGATTG 343
|.|.|||...||.||.|||||..|.||||||||||||...||.|||||||
RBAM_030270__ 294 TTACTTTAACGGTTTTTCTCCTTTATGGTTTGTCATGCTTCTCATGATTG 343
BSNT_04935___ 344 TGCATTCAGCTACTGGAGCTGCCTACAATCCCGCCTCTATCGCTTTGATT 393
||||||||||.||.|||||.||.||.|||||.||.||||||.|.|| |.|
RBAM_030270__ 344 TGCATTCAGCCACGGGAGCCGCTTATAATCCTGCATCTATCTCATT-AAT 392
BSNT_04935___ 394 CCTCAA-ATCGTCAATGAA--CAGGGCATTCAAAAAGCAAACGCTGTGCT 440
||.||| ||.|||...||| || ||.|.||.|||||.||.||.||..|
RBAM_030270__ 393 CCCCAATATTGTCGGAGAAAGCA--GCCTGCAGAAAGCGAATGCGGTCAT 440
BSNT_04935___ 441 GCAATCCTCCGCTCAAATTGTCCGGCTTGGGGCTGTCACATTATGCGGCG 490
.||.||.||.|..||.||.|||.||||||..|| |||||.||.|.|
RBAM_030270__ 441 CCAGTCATCAGGCCAGATCGTCAGGCTTGCCGC-----CATTACGCTGAG 485
BSNT_04935___ 491 C----TTTTCTT-ACGTTTATCAGTCCTTCTTATACCATGCTTATCGCAC 535
| |.||||| ||.|||||||||||..|||||.|..||.|||||||.|
RBAM_030270__ 486 CGGGGTGTTCTTAACATTTATCAGTCCCGCTTATTCTTTGTTTATCGCTC 535
BSNT_04935___ 536 TTGTGCTCTATTTGGTGTCGGGTTTTCTCGTTCTTTTTAT-------TAA 578
||.|..|||||.|..|.||.|||||||||||.||.||||| .||
RBAM_030270__ 536 TTATATTCTATCTTCTATCAGGTTTTCTCGTACTCTTTATGTCATACCAA 585
BSNT_04935___ 579 GTACACTGCGGTTGAATCTCAATCAG-----AGTCTGCGGTTGTTACACA 623
||.|| |.||..|||.||| |||| |.|||.|.|||
RBAM_030270__ 586 GTCCA--------GCATGCCAAACAGGATCCAGTC----GCTGTCAGACA 623
BSNT_04935___ 624 GAGAGGCACATATATCGGAAGACTGAAACGCGGCTTTAG-GCTCGTCAGA 672
|.|.||.||.|||.|||||||.||.||||| ||.|||.| .||.|||||.
RBAM_030270__ 624 GCGCGGGACGTATTTCGGAAGGCTCAAACG-GGGTTTCGTTCTTGTCAGG 672
BSNT_04935___ 673 AAACACCAGATTTTATATCCGCTCGCCATTTACTGTATCTTTATGAATTT 722
|||||||||||||||||.|||||||||||.||.||||||||.||||||||
RBAM_030270__ 673 AAACACCAGATTTTATACCCGCTCGCCATCTATTGTATCTTCATGAATTT 722
BSNT_04935___ 723 CGCGGCTGCCCCATGGGAAGCGCTCTCTGCCGTATACGTTGCGGAAGATT 772
.|||||.||.||.|||||.||||||||||||||.||.||.||.|||||||
RBAM_030270__ 723 TGCGGCCGCTCCGTGGGAGGCGCTCTCTGCCGTTTATGTCGCCGAAGATT 772
BSNT_04935___ 773 TAAACGGAGA----GCCGATCGTTTACTCGCTGTTAAAAGCCAC---CAC 815
||||| | |||||||.|.||||||||.||.|||||.|| ||
RBAM_030270__ 773 TAAAC----ATGCCGCCGATCATCTACTCGCTTTTGAAAGCGACAGGCA- 817
BSNT_04935___ 816 TGCCGGG-GGTGCGTTTTTATTAGGGTTTGTGCTGGCGAAAGTCAAAGTA 864
|||| ||.||.||||||.|.||.|||.|..||||.||.||.||.||.
RBAM_030270__ 818 ---CGGGCGGAGCCTTTTTAATGGGTTTTATTTTGGCTAAGGTGAAGGTG 864
BSNT_04935___ 865 AACAGGTACGG---CTTGTTATTCGTCACTGCTGGCATTATTGAAGGATT 911
||||..||||| |.|||| |..|||| ||.||.||.||.||||||..
RBAM_030270__ 865 AACAAATACGGTCTCCTGTT-TGTGTCA--GCGGGAATCATAGAAGGAGC 911
BSNT_04935___ 912 TGCTTTCTTTATTACCGGGATGAACACCTTTTTGCCGCTCGTCTTTTTCG 961
.||.||.||.||.|||||..|.|||||.|||.|||||||||||||..|||
RBAM_030270__ 912 GGCATTTTTCATCACCGGCCTCAACACTTTTCTGCCGCTCGTCTTCCTCG 961
BSNT_04935___ 962 CTGCTTTTACCTTTGGTGCCGCAGTCAGTGCTGTTAATGTTCCTGAGTAC 1011
|.||.|||.|.||.||..|.||.|||||.|||.|||||||.||.||.||.
RBAM_030270__ 962 CCGCATTTGCGTTCGGATCTGCCGTCAGCGCTATTAATGTGCCGGAATAT 1011
BSNT_04935___ 1012 ACGATTATCCAGACGTCTGTGGATAGTGAGGATCAGCCGCAGGTTTACGC 1061
||||||||.|||||.||||||||...|||.||.||||||||.||.||.||
RBAM_030270__ 1012 ACGATTATTCAGACATCTGTGGACCATGATGACCAGCCGCAAGTCTATGC 1061
BSNT_04935___ 1062 CGTTATACATATGATCTCAAATATTTCGATTCCTGC-CGGAGCTGTCATT 1110
|||.||.||||||||||||||.||.||.||||| || |||.||.||..||
RBAM_030270__ 1062 CGTCATCCATATGATCTCAAACATATCCATTCC-GCTCGGCGCGGTTCTT 1110
BSNT_04935___ 1111 TGCGGGTATGCCGCTAATGCTTTCGGCTCAGGAACAGTGATTGCTGCCGG 1160
|||||.||.||.|||||.||.|||||..|.||||.|||.|||||.|||||
RBAM_030270__ 1111 TGCGGATACGCGGCTAACGCCTTCGGTCCCGGAAAAGTCATTGCCGCCGG 1160
BSNT_04935___ 1161 CGGGATTGTCGAAATTATTGCGGGTATCGGAATCTTGCTGTTTACAAAAC 1210
|||..|.||.|||.|..|..|.|||.|||||||.|||.|.|||||.||.|
RBAM_030270__ 1161 CGGTCTCGTTGAAGTCCTGTCCGGTCTCGGAATATTGTTCTTTACGAAGC 1210
BSNT_04935___ 1211 TGGCCAAAGCAGAAAGGTCCGACCTGATTAAAGAAAGGGAAGCAAGTGTT 1260
||||||||||.|||.|.||.||.||.||.|..||||..|||||.||
RBAM_030270__ 1211 TGGCCAAAGCCGAACGTTCAGATCTCATCAGGGAAAAAGAAGCGAG---- 1256
BSNT_04935___ 1261 CATCTGTAA----- 1269
||||.| ||
RBAM_030270__ 1257 CATCAG-AATATAG 1269
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