Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04935 and RBAM_030270

See Amino acid alignment / Visit BSNT_04935 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:28
# Commandline: needle
#    -asequence dna-align/BSNT_04935___yvqJ.1.9828.seq
#    -bsequence dna-align/RBAM_030270___yvqJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04935___yvqJ-RBAM_030270___yvqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04935___yvqJ-RBAM_030270___yvqJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04935___yvqJ
# 2: RBAM_030270___yvqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1314
# Identity:     938/1314 (71.4%)
# Similarity:   938/1314 (71.4%)
# Gaps:          90/1314 ( 6.8%)
# Score: 3218.5
# 
#
#=======================================

BSNT_04935___      1 ATGG-TGAATTTAATTGAA-AGTGATAGCATCTGGAAGAGAAATTTCAAT     48
                     |||| |..||.||||  || ||.||.|||||||||||.|.||||||||..
RBAM_030270__      1 ATGGATACATATAAT--AAGAGCGAGAGCATCTGGAATAAAAATTTCACC     48

BSNT_04935___     49 TATCTGTTTTTCTCAAGAATAGTCAAGATATCCGGCGATATGTTCGCATT     98
                     ..|||||||.|||||||..|.||.||..|.||.|||||....||.||.||
RBAM_030270__     49 CTTCTGTTTATCTCAAGGCTGGTTAAATTGTCAGGCGACGGTTTTGCCTT     98

BSNT_04935___     99 TAATTCAATATTATGGTTTTTAATTTATGACGGCAAAGGTGCGATCGGCA    148
                     ||||||.||..|.||||||||.||||.||||||..||||.||||||||||
RBAM_030270__     99 TAATTCCATTCTGTGGTTTTTGATTTTTGACGGGGAAGGCGCGATCGGCA    148

BSNT_04935___    149 -----CTGCTTTATTGATTGCTGTCACGTTTTTGCCGGAAGCCGTTCTGG    193
                          ||||     |.|||||.||||||||..|.|||||.||..|.||||
RBAM_030270__    149 CGTCCCTGC-----TCATTGCGGTCACGTTCCTTCCGGAGGCGATGCTGG    193

BSNT_04935___    194 CGCCTGTGACGGGGCCTTTTATGAAACAGACCACGCTGAAATTCTGGATG    243
                     ||||..|.||.||||||||||||||.|||...||||||||||||||||||
RBAM_030270__    194 CGCCGATTACCGGGCCTTTTATGAAGCAGCATACGCTGAAATTCTGGATG    243

BSNT_04935___    244 TACTTTTCAGATCTGACAAGGGCGGCGATTGTTTTGATTATCCCTCTATG    293
                     ||.||.||.||.|||||..|.||||||.|.||.|||||.||.||..|.||
RBAM_030270__    244 TATTTCTCCGACCTGACGCGCGCGGCGGTCGTGTTGATCATTCCGGTCTG    293

BSNT_04935___    294 TCATTTTGCGGGCTTCTCTCCGCTGTGGTTTGTCATGACACTTATGATTG    343
                     |.|.|||...||.||.|||||..|.||||||||||||...||.|||||||
RBAM_030270__    294 TTACTTTAACGGTTTTTCTCCTTTATGGTTTGTCATGCTTCTCATGATTG    343

BSNT_04935___    344 TGCATTCAGCTACTGGAGCTGCCTACAATCCCGCCTCTATCGCTTTGATT    393
                     ||||||||||.||.|||||.||.||.|||||.||.||||||.|.|| |.|
RBAM_030270__    344 TGCATTCAGCCACGGGAGCCGCTTATAATCCTGCATCTATCTCATT-AAT    392

BSNT_04935___    394 CCTCAA-ATCGTCAATGAA--CAGGGCATTCAAAAAGCAAACGCTGTGCT    440
                     ||.||| ||.|||...|||  ||  ||.|.||.|||||.||.||.||..|
RBAM_030270__    393 CCCCAATATTGTCGGAGAAAGCA--GCCTGCAGAAAGCGAATGCGGTCAT    440

BSNT_04935___    441 GCAATCCTCCGCTCAAATTGTCCGGCTTGGGGCTGTCACATTATGCGGCG    490
                     .||.||.||.|..||.||.|||.||||||..||     |||||.||.|.|
RBAM_030270__    441 CCAGTCATCAGGCCAGATCGTCAGGCTTGCCGC-----CATTACGCTGAG    485

BSNT_04935___    491 C----TTTTCTT-ACGTTTATCAGTCCTTCTTATACCATGCTTATCGCAC    535
                     |    |.||||| ||.|||||||||||..|||||.|..||.|||||||.|
RBAM_030270__    486 CGGGGTGTTCTTAACATTTATCAGTCCCGCTTATTCTTTGTTTATCGCTC    535

BSNT_04935___    536 TTGTGCTCTATTTGGTGTCGGGTTTTCTCGTTCTTTTTAT-------TAA    578
                     ||.|..|||||.|..|.||.|||||||||||.||.|||||       .||
RBAM_030270__    536 TTATATTCTATCTTCTATCAGGTTTTCTCGTACTCTTTATGTCATACCAA    585

BSNT_04935___    579 GTACACTGCGGTTGAATCTCAATCAG-----AGTCTGCGGTTGTTACACA    623
                     ||.||        |.||..|||.|||     ||||    |.|||.|.|||
RBAM_030270__    586 GTCCA--------GCATGCCAAACAGGATCCAGTC----GCTGTCAGACA    623

BSNT_04935___    624 GAGAGGCACATATATCGGAAGACTGAAACGCGGCTTTAG-GCTCGTCAGA    672
                     |.|.||.||.|||.|||||||.||.||||| ||.|||.| .||.|||||.
RBAM_030270__    624 GCGCGGGACGTATTTCGGAAGGCTCAAACG-GGGTTTCGTTCTTGTCAGG    672

BSNT_04935___    673 AAACACCAGATTTTATATCCGCTCGCCATTTACTGTATCTTTATGAATTT    722
                     |||||||||||||||||.|||||||||||.||.||||||||.||||||||
RBAM_030270__    673 AAACACCAGATTTTATACCCGCTCGCCATCTATTGTATCTTCATGAATTT    722

BSNT_04935___    723 CGCGGCTGCCCCATGGGAAGCGCTCTCTGCCGTATACGTTGCGGAAGATT    772
                     .|||||.||.||.|||||.||||||||||||||.||.||.||.|||||||
RBAM_030270__    723 TGCGGCCGCTCCGTGGGAGGCGCTCTCTGCCGTTTATGTCGCCGAAGATT    772

BSNT_04935___    773 TAAACGGAGA----GCCGATCGTTTACTCGCTGTTAAAAGCCAC---CAC    815
                     |||||    |    |||||||.|.||||||||.||.|||||.||   || 
RBAM_030270__    773 TAAAC----ATGCCGCCGATCATCTACTCGCTTTTGAAAGCGACAGGCA-    817

BSNT_04935___    816 TGCCGGG-GGTGCGTTTTTATTAGGGTTTGTGCTGGCGAAAGTCAAAGTA    864
                        |||| ||.||.||||||.|.||.|||.|..||||.||.||.||.||.
RBAM_030270__    818 ---CGGGCGGAGCCTTTTTAATGGGTTTTATTTTGGCTAAGGTGAAGGTG    864

BSNT_04935___    865 AACAGGTACGG---CTTGTTATTCGTCACTGCTGGCATTATTGAAGGATT    911
                     ||||..|||||   |.|||| |..||||  ||.||.||.||.||||||..
RBAM_030270__    865 AACAAATACGGTCTCCTGTT-TGTGTCA--GCGGGAATCATAGAAGGAGC    911

BSNT_04935___    912 TGCTTTCTTTATTACCGGGATGAACACCTTTTTGCCGCTCGTCTTTTTCG    961
                     .||.||.||.||.|||||..|.|||||.|||.|||||||||||||..|||
RBAM_030270__    912 GGCATTTTTCATCACCGGCCTCAACACTTTTCTGCCGCTCGTCTTCCTCG    961

BSNT_04935___    962 CTGCTTTTACCTTTGGTGCCGCAGTCAGTGCTGTTAATGTTCCTGAGTAC   1011
                     |.||.|||.|.||.||..|.||.|||||.|||.|||||||.||.||.||.
RBAM_030270__    962 CCGCATTTGCGTTCGGATCTGCCGTCAGCGCTATTAATGTGCCGGAATAT   1011

BSNT_04935___   1012 ACGATTATCCAGACGTCTGTGGATAGTGAGGATCAGCCGCAGGTTTACGC   1061
                     ||||||||.|||||.||||||||...|||.||.||||||||.||.||.||
RBAM_030270__   1012 ACGATTATTCAGACATCTGTGGACCATGATGACCAGCCGCAAGTCTATGC   1061

BSNT_04935___   1062 CGTTATACATATGATCTCAAATATTTCGATTCCTGC-CGGAGCTGTCATT   1110
                     |||.||.||||||||||||||.||.||.||||| || |||.||.||..||
RBAM_030270__   1062 CGTCATCCATATGATCTCAAACATATCCATTCC-GCTCGGCGCGGTTCTT   1110

BSNT_04935___   1111 TGCGGGTATGCCGCTAATGCTTTCGGCTCAGGAACAGTGATTGCTGCCGG   1160
                     |||||.||.||.|||||.||.|||||..|.||||.|||.|||||.|||||
RBAM_030270__   1111 TGCGGATACGCGGCTAACGCCTTCGGTCCCGGAAAAGTCATTGCCGCCGG   1160

BSNT_04935___   1161 CGGGATTGTCGAAATTATTGCGGGTATCGGAATCTTGCTGTTTACAAAAC   1210
                     |||..|.||.|||.|..|..|.|||.|||||||.|||.|.|||||.||.|
RBAM_030270__   1161 CGGTCTCGTTGAAGTCCTGTCCGGTCTCGGAATATTGTTCTTTACGAAGC   1210

BSNT_04935___   1211 TGGCCAAAGCAGAAAGGTCCGACCTGATTAAAGAAAGGGAAGCAAGTGTT   1260
                     ||||||||||.|||.|.||.||.||.||.|..||||..|||||.||    
RBAM_030270__   1211 TGGCCAAAGCCGAACGTTCAGATCTCATCAGGGAAAAAGAAGCGAG----   1256

BSNT_04935___   1261 CATCTGTAA-----   1269
                     ||||.| ||     
RBAM_030270__   1257 CATCAG-AATATAG   1269


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