Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04933 and RBAM_030260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:28
# Commandline: needle
# -asequence dna-align/BSNT_04933___yvqI.1.9828.seq
# -bsequence dna-align/RBAM_030260___yvqI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04933___yvqI-RBAM_030260___yvqI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04933___yvqI-RBAM_030260___yvqI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04933___yvqI
# 2: RBAM_030260___yvqI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 402
# Identity: 270/402 (67.2%)
# Similarity: 270/402 (67.2%)
# Gaps: 42/402 (10.4%)
# Score: 893.0
#
#
#=======================================
BSNT_04933___ 1 ATGAAGATCAACAAGAAAACAATAGGCGGATTCTTATTAATTGTATTTGG 50
|||||.||.||....|||||...||||||.||..|..|.|||||.||.||
RBAM_030260__ 1 ATGAATATAAATGGCAAAACGGCAGGCGGCTTTCTGCTGATTGTGTTCGG 50
BSNT_04933___ 51 GATCTCCGTCTTTTTTGGAGGAGGAAGCTTCGGCTTTATCATCCCGCTCG 100
..|.||.||||||||.||||||||....||||..||||||||||||||.|
RBAM_030260__ 51 ACTTTCTGTCTTTTTCGGAGGAGGCCATTTCGCATTTATCATCCCGCTGG 100
BSNT_04933___ 101 CCATCGGGAGCTTGATGACATACGCAGGAGTCAAAAGGTTT-------GC 143
|.|||||..||.|||||...|||...|||.|||||.|.||| ||
RBAM_030260__ 101 CGATCGGAGGCCTGATGCTTTACTGGGGAATCAAACGTTTTTCAAAAGGC 150
BSNT_04933___ 144 C--GCGGGAAAAACCATTA-CGGGAATCATCGTGGGCGGTATCGGAGCCA 190
| |||| || ||||.|||||||.|||||..||||||||.|
RBAM_030260__ 151 CGGGCGG----------TATCGGGTATCATCGCGGGCGTCATCGGAGCTA 190
BSNT_04933___ 191 TTATGCTCATCTGCTCACTTCCGTTTGTCGTCGGAATCGCATTGGCGGCC 240
|.||.|||.||.|.||.|||||.|||.||||.|..||||.|.||||.|.|
RBAM_030260__ 191 TGATTCTCGTCGGTTCTCTTCCATTTATCGTTGCGATCGGACTGGCCGGC 240
BSNT_04933___ 241 GCTATGGTGTATTACGGCTGGAAGCTGATGAAAAA---CGGATCAGCTGA 287
||.||||||||||.|||.||||||.|||||||..| |||.||| ||
RBAM_030260__ 241 GCCATGGTGTATTTCGGGTGGAAGATGATGAAGCAGGGCGGCTCA---GA 287
BSNT_04933___ 288 TAACGGT--------GTATCATCTTTTGATCCTGAACCGGCTTCTGCTGC 329
.|.||.| ||| |||.||.|||.||||.||..|.|.
RBAM_030260__ 288 CACCGCTTCCCGCCAGTA--------TGAACCGGAAGCGGCATCACCGGG 329
BSNT_04933___ 330 CTACCAATCTCACTTTGATGACGAATGGGAAGAATTTTTGAAGAAAAAAT 379
|||.|||||....|||||....|||||||||||||||.||||||||||||
RBAM_030260__ 330 CTATCAATCCGGATTTGACTCTGAATGGGAAGAATTTCTGAAGAAAAAAT 379
BSNT_04933___ 380 AA 381
||
RBAM_030260__ 380 AA 381
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