Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04923 and RBAM_030200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:27
# Commandline: needle
# -asequence dna-align/BSNT_04923___gerAC.1.9828.seq
# -bsequence dna-align/RBAM_030200___gerAC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04923___gerAC-RBAM_030200___gerAC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04923___gerAC-RBAM_030200___gerAC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04923___gerAC
# 2: RBAM_030200___gerAC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1206
# Identity: 754/1206 (62.5%)
# Similarity: 754/1206 (62.5%)
# Gaps: 183/1206 (15.2%)
# Score: 2127.5
#
#
#=======================================
BSNT_04923___ 1 ATGAA------------AATCCGGATTTTATGTATGTTTATATGCACCCT 38
||||| |||| ||..|| |||||
RBAM_030200__ 1 ATGAAGACATACATCGTAATC------------ATCCTT---TGCAC--- 32
BSNT_04923___ 39 ATTGC---TGTCCGGATGCTGGGACAGTGAGAATATCGAGGAATTAAGCT 85
||||| ||.||||.|||||||||||....|||.|.||.||.||.|||.
RBAM_030200__ 33 ATTGCTTTTGGCCGGCTGCTGGGACAGCCGCAATTTAGAAGACTTGAGCC 82
BSNT_04923___ 86 TAGTGATCGGAGTAGGGCTAGACAAGCCTGACGATGAAAATTTAGAGCTG 135
|.||.||||||||.|||||.||.||.||.||.||.|||||..|.||..||
RBAM_030200__ 83 TCGTTATCGGAGTCGGGCTCGATAAACCCGAGGAAGAAAACGTGGAAGTG 132
BSNT_04923___ 136 ACACAGCAAATTCTCGTGCCGAAAAAAATCAGCGAGGGC-------TCTT 178
||||||||.|||||.||.|||.|||| |||.||..| ||.|
RBAM_030200__ 133 ACACAGCAGATTCTGGTTCCGCAAAA----AGCAAGTTCCCAGCAGTCGT 178
BSNT_04923___ 179 CATCTG---ATCCGACACAG----CTTTCTATCACAAAGGGTGAAACTGT 221
|.||.| ||.|||||.|| |||.|..||.| ||.|||||.||
RBAM_030200__ 179 CGTCAGGCAATACGACAAAGGTGACTTCCACTCCC----GGGGAAACCGT 224
BSNT_04923___ 222 CCATCAAATGATGAGAACCTCTGCATTAAAGCATAATCCTACGTTTTTAC 271
|||||||....|.||.||..|..|.|||||..||.|.||..|.||.|..|
RBAM_030200__ 225 CCATCAAGCTTTAAGGACGGCATCGTTAAAAAATCACCCCGCATTCTCCC 274
BSNT_04923___ 272 AGCATTTGCGTCTCATTCTGCTTTCCAAAAACG-TGATTGCGGATCAAAT 320
||||.|||||..||||.|||.||||| .||.|| ||.|...||||||.||
RBAM_030200__ 275 AGCACTTGCGCATCATGCTGTTTTCC-GAAGCGCTGTTAAAGGATCACAT 323
BSNT_04923___ 321 CGGAACG---GATGCCATT-ATTAACCAGTTTGTCAGAGACAACGGAACA 366
| .|| ||.| |||| ||.|||||.|||.||||.||||||||.||.
RBAM_030200__ 324 C---CCGCTTGACG-CATTGATGAACCAATTTATCAGGGACAACGGTACG 369
BSNT_04923___ 367 AGGAGGAGTTCCTACGTCTTTATCACCAACG--GCCG-----AACTAAGG 409
||.||.||.|.|.|.||..| .||| |||| |||.||.|
RBAM_030200__ 370 AGAAGAAGCTGCAATGTGAT-------GACGGTGCCGGATAAAACGAAAG 412
BSNT_04923___ 410 ATATATTTAACATGAATGATGAAGACGAACCCGCATCCAACGTGATATAT 459
||||.||.||.||.|.|||..|.|..|||||.||.||.||...|||.|||
RBAM_030200__ 413 ATATTTTCAAAATCAGTGACCAGGGAGAACCTGCGTCAAATACGATCTAT 462
BSNT_04923___ 460 GATCTGACAGAGAATAATAAGGTGACGATCAGAATGATGGAGCCAGTTAC 509
||..|.||.|||||||||..|||.||.|||.|.|||||||.|||.||.||
RBAM_030200__ 463 GACTTAACGGAGAATAATTCGGTCACCATCCGGATGATGGCGCCCGTGAC 512
BSNT_04923___ 510 ATTGGGGGAGATCTCAGAACACTTAACCTCTGACGA-----TT--CATTC 552
|||||||||.||.|||||..|..|..||...|.||| || |.|||
RBAM_030200__ 513 ATTGGGGGAAATATCAGAGAAAATCGCCAAAGGCGAGACCTTTGCCCTTC 562
BSNT_04923___ 553 CTCA--TCCCTCATGTCGGTAAGGAAAAC-GGAAAGCTCGCGATAAACGG 599
|||| |.|..||.||.||.| |.|.|| |||||.||.| ||
RBAM_030200__ 563 CTCAAGTGCGCCAAGTGGGCA--GCAGACTGGAAATCTGG--------GG 602
BSNT_04923___ 600 AGCCTCTATCATCAAAAATAAATTATGGCACG-GAGATCTCACCCCGATT 648
.||..|.||.||.|||||||||||.|||.|.| || ||.|.||.||..|.
RBAM_030200__ 603 CGCTACCATTATTAAAAATAAATTCTGGTATGCGA-ATTTAACGCCTTTA 651
BSNT_04923___ 649 GAGGTTCAAAATATCAACTTATTTTCAGGCAATGTCGAGGGAGGCGTCAT 698
.|.||.||.|||||.|||.|.||..||||||..||..|||||||||||
RBAM_030200__ 652 CAAGTCCAGAATATGAACCTGTTCACAGGCACGGTAAAGGGAGGCGTC-- 699
BSNT_04923___ 699 TGAC--TTG--AAGCGCGATGGCCATC--TCTTT-TCTTATAAAGTATAT 741
|| ||| |||| |||.|.||| |.||| ||.|...||||||.|
RBAM_030200__ 700 --ACGTTTGCAAAGC---ATGACAATCATTATTTATCCTTCGAAGTATTT 744
BSNT_04923___ 742 TCAAGC------AATCGGAAGATCAAGACGGCCTATAAGGACGGAAAGTT 785
||.||| ||| |.||.|.|||.| |||||..|.|||||.||
RBAM_030200__ 745 TCCAGCAAATATAAT-GTAAAAACAAAA-----TATAAAAATGGAAAATT 788
BSNT_04923___ 786 CAAATTCACCGTCACCCGCACTATTGAAGGTCGTCTATCTGAGGACTGGA 835
|||.||.|.|||.|||||...|.|||||||.|||||.||||||||.||||
RBAM_030200__ 789 CAAGTTTATCGTAACCCGGTTTGTTGAAGGCCGTCTGTCTGAGGATTGGA 838
BSNT_04923___ 836 ATCCTAGTGAAGATTCGTTTAAGGATTCATATATTAAAAGCATTGAAAAG 885
|.||.|..||||||||.||.|||||.||.|||||.|| |||||
RBAM_030200__ 839 ACCCGAAAGAAGATTCTTTCAAGGAGTCCTATATAAA------TGAAA-- 880
BSNT_04923___ 886 ACAGTCGAAAAAC------AAGTACACA--AAACAGTAACGA-------- 919
|| |||||| || ||.|| |..||.|.| ||
RBAM_030200__ 881 ----TC-AAAAACGCGGTAAA--ACGCAGCATTCATTCA-GATGTCATGG 922
BSNT_04923___ 920 ----CATTTATTACAGAGAAACTGCAGAAAGAGATCAAAGCGGATGTGAC 965
||||.|||||| |||||.|.|||.|.||||.||||.|.||
RBAM_030200__ 923 CATTCATTGATTACA-------TGCAGCATGAGTTGAAAGTGGATATTAC 965
BSNT_04923___ 966 CGGATTGGGAAACCAAGTCAGAATTCATTATCCTCAAAAGTGGAAAAAGA 1015
|||.||.||..|.||||||.|.|||||||||||..|.||.||||||||||
RBAM_030200__ 966 CGGGTTAGGCGATCAAGTCCGGATTCATTATCCCGATAAATGGAAAAAGA 1015
BSNT_04923___ 1016 TCTCAAGAAAATGGGATGATGATTATTTCAG-CAATGCGGAAATAGACTA 1064
|.||.....|.||| |||.||.|.||||| .||| ||||.||.||.||
RBAM_030200__ 1016 TATCCTCTGACTGG---GATCATCACTTCAGTGAAT-CGGATATTGAATA 1061
BSNT_04923___ 1065 CCGGGTCAATGTGATTGTCAGAGACTTCGGAACGAAAGGCGCAAA----C 1110
|...|||||.||.....||||.||.||||||||.||.|| || |
RBAM_030200__ 1062 CAAAGTCAAAGTCGCCATCAGGGATTTCGGAACAAAGGG----AATGTCC 1107
BSNT_04923___ 1111 AAATAA 1116
.|||.|
RBAM_030200__ 1108 CAATGA 1113
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