Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04921 and RBAM_030180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:27
# Commandline: needle
# -asequence dna-align/BSNT_04921___gerAA.1.9828.seq
# -bsequence dna-align/RBAM_030180___gerAA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04921___gerAA-RBAM_030180___gerAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04921___gerAA-RBAM_030180___gerAA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04921___gerAA
# 2: RBAM_030180___gerAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1500
# Identity: 1060/1500 (70.7%)
# Similarity: 1060/1500 (70.7%)
# Gaps: 108/1500 ( 7.2%)
# Score: 3652.0
#
#
#=======================================
BSNT_04921___ 1 TTGGAACAAACAGAGTTTAAGGAATATATACACGATAATTTAGCATTGGT 50
.|||..|||.|.||.||.||||||||.|||||||.||||.|.|||.||||
RBAM_030180__ 1 ATGGCGCAATCGGAATTCAAGGAATACATACACGTTAATCTGGCACTGGT 50
BSNT_04921___ 51 GCTGCCAAAATTAAAAGAAAACGATGATCTGGTGAAAAACAAAAAAATGC 100
|||.||..|..||.|..|.||.|||||.|||||..||||.|||||.||||
RBAM_030180__ 51 GCTTCCCCACGTAGAGCAGAATGATGACCTGGTTCAAAATAAAAAGATGC 100
BSNT_04921___ 101 TTGCGAACGGACTGGTTTTTTACTATCTCTATTTCAGTGAACTGACTGAT 150
||.|||||||.||.||||||||.|||.|.|||.|.||||||.|||..||.
RBAM_030180__ 101 TTCCGAACGGGCTTGTTTTTTATTATATGTATCTGAGTGAAATGAACGAC 150
BSNT_04921___ 151 G-----AGAATAAGGTGTCAGAAGCCATTAAAACTTTAATTAAAGATGAG 195
| |.||||| .|||.||.|||.||||..|..||.|.||.||.
RBAM_030180__ 151 GAAGACAAAATAA-----AAGAGGCGATTGAAACGCTGCTTCAGGAGGAA 195
BSNT_04921___ 196 GAGACCTTAACGCTTGACCAGGTCAAAAAACGCCTTGACCAGCTTGACGC 245
||.||..|.|||||.||...|||.|..|||||.|||||..||.|.|||||
RBAM_030180__ 196 GACACTCTGACGCTGGATACGGTGACGAAACGTCTTGATAAGATCGACGC 245
BSNT_04921___ 246 AAGACC--TGTTGAAACCGCAAAAAAAACGATTGAA---------TCGAT 284
..|.|| |.||.| || .|||..||| ||.||
RBAM_030180__ 246 CCGTCCCGTCTTTA---CG--------TCGAAGGAAGCCGTCATCTCCAT 284
BSNT_04921___ 285 TCTCAACGGCAATTGTGCTGTGTTTATCAACGGA-TTGGATAAAGCCTAT 333
|||....||.||.||.||.||||||||.|||||| ||| |.|||.|||
RBAM_030180__ 285 TCTGCGGGGAAAATGCGCCGTGTTTATTAACGGACTTG---ACAGCGTAT 331
BSNT_04921___ 334 --ATTCTGACCACAGGAAAGAAAAAAACAAGAAGCCTGACAGAGCCGACA 381
|||.||.||||.|||||.|.|.|||.|||||||.|||..||.||.|||
RBAM_030180__ 332 ACATTTTGTCCACGGGAAAAAGAGAAAAAAGAAGCGTGAATGAACCCACA 381
BSNT_04921___ 382 ACTGAAATAGTGGTTCGCGGCCCAAAAGTAGCGTTTGTAGAGGATATC-G 430
.|.||||..||.||..|.||.||.|||.|.||.||..||||.||| || |
RBAM_030180__ 382 TCCGAAAAGGTCGTAAGAGGTCCGAAAATCGCCTTCATAGAAGAT-TCTG 430
BSNT_04921___ 431 ATACAAATCTCGCTCTGATTAGACA----AAGAACCTCTCATCCGAAATT 476
|||||||..||||..||||.||.|| |.|||| ||||||||..|
RBAM_030180__ 431 ATACAAACGTCGCCATGATCAGGCAGCGCACGAAC----CATCCGAAGCT 476
BSNT_04921___ 477 GATCACCAAAAAAATCATGATCGGCGAAAACAAGCTGAAGCCCGCAGCCA 526
||..||.|||||..|...||||||.|||||.|||.|.||...|||..|..
RBAM_030180__ 477 GAAAACGAAAAAGGTTCCGATCGGAGAAAATAAGTTAAAATACGCCACTG 526
BSNT_04921___ 527 TTATGTACATTGAAGGCAAAGCAAAAAAGTC---CGTCA---------TA 564
|.||||||||.||.|..||.||..|...||| ||||| ||
RBAM_030180__ 527 TCATGTACATAGATGATAAGGCGGACCCGTCTGTCGTCAGCGATGTTGTA 576
BSNT_04921___ 565 AA---------AGAAGTGAAGGCGCGGCTTAAAAATATCCAGCTGGAAGA 605
|| .||||||| ||.||||.||
RBAM_030180__ 577 AAGCGCCTCAGCGAAGTGA---------------------AGATGGACGA 605
BSNT_04921___ 606 TATCCAGGACAGCGGAACGCTCGAGGAACTCATTGAAGATAATAAATATT 655
.||||||||...|||||||||.|||||.||.|||||.||||||||.||||
RBAM_030180__ 606 CATCCAGGATTCCGGAACGCTTGAGGAGCTTATTGAGGATAATAAGTATT 655
BSNT_04921___ 656 CACCATTTCCGCAGATTCAAAATACGGAAAGACCTGACAAAGTATCTTCA 705
|.||.||||||||.||.||||||||||||.|.|||||.|||||.|||||.
RBAM_030180__ 656 CGCCCTTTCCGCAAATACAAAATACGGAACGGCCTGATAAAGTCTCTTCC 705
BSNT_04921___ 706 GCCCTGTTTAACGGCCGTGTGGCAATTTTGGTCGATGGTTCACCATTTGT 755
|||.||||.||||||||.||.||.||..|.|||||....||.||.||||.
RBAM_030180__ 706 GCCTTGTTCAACGGCCGCGTCGCCATCCTTGTCGACAACTCGCCGTTTGC 755
BSNT_04921___ 756 GCTGCTGGTGCCGGTTTCTCTCGGCATCCTGATGCAATCCCCGGATGACT 805
||||.||||.||||.||||.|.||.||..|.|||||.||.||.|||||.|
RBAM_030180__ 756 GCTGGTGGTTCCGGCTTCTTTAGGAATTTTAATGCAGTCTCCCGATGATT 805
BSNT_04921___ 806 ACTATGAACGCTGGATTTCAGCATCTCTTATCCGGTCGCTGCGCTATGCT 855
|.||||||||.||||||||.||.||.||.||||||..||||||.|.|.|.
RBAM_030180__ 806 ATTATGAACGGTGGATTTCCGCCTCGCTCATCCGGGTGCTGCGGTTTACG 855
BSNT_04921___ 856 TCTATCTTTATCACCTTGTTTTTGTCATCGATTTATATAGCACTTGTTTC 905
|||||.|||||.||..|||||||.||.||.||||||||.||.||.|||||
RBAM_030180__ 856 TCTATTTTTATTACGCTGTTTTTTTCGTCTATTTATATCGCCCTCGTTTC 905
BSNT_04921___ 906 CTTCCATCAGGGGCTGCTGCCGACCGCGCTCGCCGTTACAATTTCGGCGA 955
.||.||.||.||||||||||||||..||||.||.||.||.||..||||||
RBAM_030180__ 906 GTTTCACCAAGGGCTGCTGCCGACATCGCTTGCAGTCACCATCGCGGCGA 955
BSNT_04921___ 956 ACAGGGAAAACGTGCCGTTCCCTCCGATATTTGAAGCCCTGCTGATGGAA 1005
||||.||||||||.||.|||||.||.||..|||||||..||.|.||||||
RBAM_030180__ 956 ACAGAGAAAACGTTCCCTTCCCGCCTATCATTGAAGCGATGGTAATGGAA 1005
BSNT_04921___ 1006 GTCACCATCGAGCTGCTAAGGGAAGCCGGACTGCGACTCCCCAATCCGCT 1055
.|.||.||.||||||||.||.|||||.||..||.|.||.||||..|||||
RBAM_030180__ 1006 ATTACGATAGAGCTGCTGAGAGAAGCGGGCTTGAGGCTTCCCAGCCCGCT 1055
BSNT_04921___ 1056 CGGACAGACGATCGGCCTCGTTGGGGGCGTAGTCATCGGACAGGCTGCTG 1105
|||.|||||||||||..|.||.||.||.||.||||||||.|||||.||.|
RBAM_030180__ 1056 CGGCCAGACGATCGGATTGGTGGGCGGAGTCGTCATCGGCCAGGCGGCCG 1105
BSNT_04921___ 1106 TAGAAGCGAATCTCGTCAGTTCGATTATGGTCATTGTCGTCAGTGTCATT 1155
|.|||||||||.|.|||||.||.||.||||||||.||.||||| ||||
RBAM_030180__ 1106 TTGAAGCGAATATTGTCAGCTCCATCATGGTCATCGTGGTCAG---CATT 1152
BSNT_04921___ 1156 ---GCCCTGGCATCCTTTACCGTTCCTCAATACGGAATGGGTCTGTCTTT 1202
||.||.||.||.|||||.||.||.||.|||||.|||||||||||.||
RBAM_030180__ 1153 GTCGCGCTCGCTTCATTTACGGTGCCGCAGTACGGGATGGGTCTGTCGTT 1202
BSNT_04921___ 1203 CCGGGTGCTGCGTTTTATTTCGATGTTTTCCGCCGCTATTTTAGGGCTGT 1252
|||.|||||.|||||.||||||||||||.||||.||...|||.|||||||
RBAM_030180__ 1203 CCGTGTGCTCCGTTTCATTTCGATGTTTACCGCGGCAGCTTTCGGGCTGT 1252
BSNT_04921___ 1253 ACGGCATTATTTTATTTATGCTTGTCG-TTTATACGCACTTAACGAGACA 1301
|||||||.||||||||||||| ||.|| |.||.||.||.|||.||||||
RBAM_030180__ 1253 ACGGCATGATTTTATTTATGC-TGGCGATCTACACTCATTTATCGAGAC- 1300
BSNT_04921___ 1302 AACG-AGCTTTGGGTCTCCGTATTTTTCGCCAAACGGATTCTTTAGCCTG 1350
|.|| |||||.||.|||||||||||.|||||.||.|||||.||.|||.|.
RBAM_030180__ 1301 AGCGAAGCTTCGGTTCTCCGTATTTCTCGCCGAATGGATTTTTCAGCTTA 1350
BSNT_04921___ 1351 AAAAATACGGATGACTCCATTATCCGTCTCCCAATTAAAAACAAACCAAA 1400
|||||..|..|.|||||.|||.||||||||||.||||||||..|||||||
RBAM_030180__ 1351 AAAAACGCAAACGACTCTATTCTCCGTCTCCCTATTAAAAATCAACCAAA 1400
BSNT_04921___ 1401 AGAGGCGAATAATCCAAATGAGCCA-AAAACAGACTCCACTGAAACTTAA 1449
|||||||||.||...|||||||||| |||||| ||| ||| || |||
RBAM_030180__ 1401 AGAGGCGAAAAACGTAAATGAGCCAGAAAACA-ACT-CAC---AA--TAA 1443
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