Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04916 and RBAM_030140

See Amino acid alignment / Visit BSNT_04916 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:27
# Commandline: needle
#    -asequence dna-align/BSNT_04916___yirB.1.9828.seq
#    -bsequence dna-align/RBAM_030140___yirB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04916___yirB-RBAM_030140___yirB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04916___yirB-RBAM_030140___yirB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04916___yirB
# 2: RBAM_030140___yirB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 167
# Identity:     142/167 (85.0%)
# Similarity:   142/167 (85.0%)
# Gaps:           4/167 ( 2.4%)
# Score: 605.0
# 
#
#=======================================

BSNT_04916___      1 ATGAGAGAATTGGACGAAATGATTAGCCGCTTGCGAAACAGAGGAATCAA     50
                     ||||.||||||.||.||||||||.|||||||||||||||||||||||.||
RBAM_030140__      1 ATGAAAGAATTAGATGAAATGATCAGCCGCTTGCGAAACAGAGGAATTAA     50

BSNT_04916___     51 AGTGGAGAAAGTCAAATATCCGAAGCAGAC--CTTGTCAGAGAAAAAATG     98
                     |||.||.||.||.|||||||||||..||||  .||||  ||.||.|||||
RBAM_030140__     51 AGTCGAAAAGGTGAAATATCCGAAAAAGACAATTTGT--GAAAAGAAATG     98

BSNT_04916___     99 GGTTCATCAATGCAAACAGCCGCTCAAAACAAATTACAGAGATTTTAACG    148
                     |||||||||||||.||.|.|||||.|||.||||.||||||||||||||||
RBAM_030140__     99 GGTTCATCAATGCCAAAAACCGCTGAAAGCAAACTACAGAGATTTTAACG    148

BSNT_04916___    149 GCTATTCTTTCACATAA    165
                     |||||||.|||||||||
RBAM_030140__    149 GCTATTCCTTCACATAA    165


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.