Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04911 and RBAM_030110

See Amino acid alignment / Visit BSNT_04911 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:26
# Commandline: needle
#    -asequence dna-align/BSNT_04911___yvtA.1.9828.seq
#    -bsequence dna-align/RBAM_030110___yvtA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04911___yvtA-RBAM_030110___yvtA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04911___yvtA-RBAM_030110___yvtA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04911___yvtA
# 2: RBAM_030110___yvtA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1411
# Identity:    1043/1411 (73.9%)
# Similarity:  1043/1411 (73.9%)
# Gaps:          83/1411 ( 5.9%)
# Score: 3758.0
# 
#
#=======================================

BSNT_04911___      1 ATG---GATTATCGACGTGATGGCCAAAA----CGATCAACATCAAACTG     43
                     |||   |||.|||||..|||.|| ||.||    ||||||  .|||    |
RBAM_030110__      1 ATGAATGATCATCGAGATGACGG-CAGAAGCCGCGATCA--GTCA----G     43

BSNT_04911___     44 AACCTTCACATACAGAACAGCAGAATACAGAAA--ACCAGAAGCTGATTG     91
                     |.|.|||||||||.||||     ||.|||||||  |.|||.|||.|||..
RBAM_030110__     44 ATCTTTCACATACGGAAC-----AAAACAGAAATGAACAGCAGCAGATCA     88

BSNT_04911___     92 GACATTCTGAACAAGAATTGCTTGACGTGCCTGTGTCTTATGAAGCGG--    139
                     |.|||...||.|..||..||||.||.|.|||.||.||..|.|||||||  
RBAM_030110__     89 GCCATCAGGAGCCCGAGCTGCTCGAAGGGCCCGTCTCGAAAGAAGCGGAA    138

BSNT_04911___    140 --------GACGGCAGGAAACGGCTTCTGCACTAGAAATGGAAAAGCAAG    181
                             |.||||.|| .|||            |||.|.||||      
RBAM_030110__    139 AACGAGATGGCGGCCGG-TACG------------GAATTTGAAA------    169

BSNT_04911___    182 AAACGGCT---GTGAAAAAAGAAAAGAAACGGAGAGCCGCATGGCTGAGC    228
                     ||||||||   ||||||||||||||.||||||||||||||.|||||||||
RBAM_030110__    170 AAACGGCTGCCGTGAAAAAAGAAAAAAAACGGAGAGCCGCTTGGCTGAGC    219

BSNT_04911___    229 CCGATTTTAGGCGGTATTATCGGCGGGGGCCTCATGCTTGGCATCGCGCC    278
                     ||||||||||||||.|||||||||||.||||||.||||||||||.|.|||
RBAM_030110__    220 CCGATTTTAGGCGGCATTATCGGCGGCGGCCTCGTGCTTGGCATTGTGCC    269

BSNT_04911___    279 TTATCTGCCGTCAGACCAAAATCAGGCGACCGAGACCGCTTCCGCAAATA    328
                     ..|.||||||...||.||..||.|   |||.||..|||.|||.|..|..|
RBAM_030110__    270 AAACCTGCCGGGTGAGCAGCATAA---GACAGAAGCCGTTTCTGATACGA    316

BSNT_04911___    329 AACAGGTGCAGTCTGATAATTTTACAACGGCGCCGATAACGAACGCATCA    378
                     ||||.||.||||||...||||||||..|..||||..|.|..||..|.|||
RBAM_030110__    317 AACAAGTTCAGTCTTCGAATTTTACGTCAACGCCTTTGAAAAATACCTCA    366

BSNT_04911___    379 AACATCGCTGATATGGTAGAGGATTTAGAGCCTACGATTGTCGGAATCT-    427
                     |.|.|.||.|||||||||||.|||||.||||||.|||||||||||.|.| 
RBAM_030110__    367 AGCGTAGCGGATATGGTAGAAGATTTGGAGCCTGCGATTGTCGGAGTGTC    416

BSNT_04911___    428 CAAATATCCAAACCTCTCAAAATAACACA-TTCGGCACAGGA-GGAGGCT    475
                     |||.|| ||||.|.||.||||..|.| || ||||| ||..|| ||.||.|
RBAM_030110__    417 CAACTA-CCAAGCTTCGCAAAGCAGC-CAGTTCGG-ACTTGACGGCGGTT    463

BSNT_04911___    476 CCAGCTCAGAAAGTGAAAGCGGAACCGGGTCAGGTGTTATTTTCAAAAAA    525
                     |.|||||.||||..||.|||||.||.||||||||.||.||.|||||||||
RBAM_030110__    464 CAAGCTCTGAAACAGAGAGCGGCACGGGGTCAGGCGTCATCTTCAAAAAA    513

BSNT_04911___    526 GACAGCAATAAAGCGTATATCATTACAAACAACCATGTCGTTGAAGGCGC    575
                     |||.||.|.||||||||.||||||||||||||.||||||||.|||||.||
RBAM_030110__    514 GACGGCGAAAAAGCGTACATCATTACAAACAATCATGTCGTAGAAGGTGC    563

BSNT_04911___    576 GAACAAGCTGACTGTTACGCTATACAACGGAGAAACGGAAACTGCCAAGC    625
                     ||||||.|||.|.||.||.||.|||||.||..||||.|||||.||.||||
RBAM_030110__    564 GAACAAACTGTCGGTCACTCTTTACAATGGGAAAACCGAAACGGCAAAGC    613

BSNT_04911___    626 TTGTCGGCAGCGATACCATTACTGATTTGGCAGTTTTGGAAATCAGCAGC    675
                     |||||||.|..|||.||||.|.|||.|||||.||.||||||||||||...
RBAM_030110__    614 TTGTCGGAAAGGATGCCATCAGTGACTTGGCTGTATTGGAAATCAGCTCG    663

BSNT_04911___    676 AAGAACGTCAAAAAAGTGGCGAGCTTTGGTGATTCTTCACAGCTGCGCAC    725
                     ...||.||||||||||.|||.|||||.||.|||||.||..||||.||||.
RBAM_030110__    664 TCCAATGTCAAAAAAGCGGCCAGCTTCGGGGATTCCTCCAAGCTCCGCAT    713

BSNT_04911___    726 TGGCGAAAAGGTAATCGCTATCGGTAACCCGCTCGGACAGCAGTTTTCCG    775
                     ||.|||.||.||.||.||.|||||.|||||||||||.|||||||||||||
RBAM_030110__    714 TGCCGATAAAGTGATTGCCATCGGCAACCCGCTCGGCCAGCAGTTTTCCG    763

BSNT_04911___    776 GTACGGTGACACAAGGCATCATTAGCGGACTGAACCGGACAATTGATGTG    825
                     |.||.||.||||||||..||||.|||||.||||||.|.||..|.||.|..
RBAM_030110__    764 GCACCGTCACACAAGGTGTCATCAGCGGGCTGAACAGAACGGTAGACGCC    813

BSNT_04911___    826 GATACAACACAAGGGACGGTGGAAATGAACGTGCTGCAAACTGATGCAGC    875
                     ||||||.|.|||||.||.|||||||||||||||.|.||.||.|||||.||
RBAM_030110__    814 GATACATCCCAAGGCACAGTGGAAATGAACGTGATTCAGACGGATGCGGC    863

BSNT_04911___    876 GATCAATCCGGGGAACAGCGGAGGCCCATTAATCAATGCAAGCGGCCAGG    925
                     |||.||.||.||.||||||||.|||||.||||||||..||||||||||.|
RBAM_030110__    864 GATTAACCCCGGAAACAGCGGCGGCCCGTTAATCAACTCAAGCGGCCAAG    913

BSNT_04911___    926 TCATCGGCATCAACAGCTTGAAGGTGAGCGAAAACGGCGTGGAATCACTT    975
                     |.|||||.|||||||||.||||.||.||.||||||||||||||.|||||.
RBAM_030110__    914 TTATCGGGATCAACAGCATGAAAGTCAGTGAAAACGGCGTGGAGTCACTC    963

BSNT_04911___    976 GGATTTGCGATCCCAAGCAATGATGTCGAGCCGATTGTTGACCAGCTGC-   1024
                     ||.|||||.||.||.|||||||||||.||.|||||.||.|||||||||| 
RBAM_030110__    964 GGCTTTGCCATTCCGAGCAATGATGTAGAACCGATAGTCGACCAGCTGCT   1013

BSNT_04911___   1025 TGCAAAACGGGAAGGTGGACCGTCCGTTTTTAGGCGTGCAGATGATTGAC   1074
                     ||||||| ||.||.||.||.||.||.||||||||.|||||||||||||||
RBAM_030110__   1014 TGCAAAA-GGAAAAGTCGAGCGCCCATTTTTAGGTGTGCAGATGATTGAC   1062

BSNT_04911___   1075 ATGTCACAAGTTCCTGAAACCTATCAGGAAAATACGCTCGGCCTGTTTGG   1124
                     |||.|.|||||.||.|||||||||||||||||.||||||||.|||||.||
RBAM_030110__   1063 ATGGCGCAAGTGCCGGAAACCTATCAGGAAAACACGCTCGGACTGTTCGG   1112

BSNT_04911___   1125 AGATCAATTGGGCAAAGGTGTTTATGTAAAAGAAGT----TCAAGCAAAT   1170
                     .||.||..||...||.||||||||.|||||||||||    ||..||    
RBAM_030110__   1113 CGACCAGCTGTCTAAGGGTGTTTACGTAAAAGAAGTGCAGTCCGGC----   1158

BSNT_04911___   1171 TCGCCGGCAGAAAAAGCAGGTATTAAATCTGAGGATGTCATTGTCAAACT   1220
                     ||||||||.|..|||||.||.||.|||||..|.||.||||||||..||.|
RBAM_030110__   1159 TCGCCGGCTGCGAAAGCGGGCATCAAATCAAATGACGTCATTGTACAATT   1208

BSNT_04911___   1221 AAACGGTAAAGACGTGGAAAGCAGTGCGGATATCCGTCAGATCCTTTACA   1270
                     .|||||.|||||.||.|..|||||.||.||||||.|.||||||.|.||.|
RBAM_030110__   1209 GAACGGCAAAGATGTCGGCAGCAGCGCCGATATCAGACAGATCTTATATA   1258

BSNT_04911___   1271 A--AGACTTAAAAGTCGGAGATAAAACAACAATCCAAGTGCTGCGAAAGG   1318
                     |  || ||.|||| ||||.||||||||.||..|.|||||.||..|||..|
RBAM_030110__   1259 ACCAG-CTGAAAA-TCGGCGATAAAACGACTGTTCAAGTTCTCAGAAGCG   1306

BSNT_04911___   1319 GAA--AAACGAAAACGTTGAACGCGACACTGACCAAGCAGACAGAAAGCA   1366
                     |||  |||  ||.|||.||||||..|||.|.||.||.||.||.|||||| 
RBAM_030110__   1307 GAAGCAAA--AAGACGCTGAACGTCACATTAACAAAACAAACTGAAAGC-   1353

BSNT_04911___   1367 GTTCAAGCTAA   1377
                       .||||||.|
RBAM_030110__   1354 --GCAAGCTGA   1362


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