Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04911 and RBAM_030110
See
Amino acid alignment /
Visit
BSNT_04911 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_04911___yvtA.1.9828.seq
# -bsequence dna-align/RBAM_030110___yvtA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04911___yvtA-RBAM_030110___yvtA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04911___yvtA-RBAM_030110___yvtA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04911___yvtA
# 2: RBAM_030110___yvtA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1411
# Identity: 1043/1411 (73.9%)
# Similarity: 1043/1411 (73.9%)
# Gaps: 83/1411 ( 5.9%)
# Score: 3758.0
#
#
#=======================================
BSNT_04911___ 1 ATG---GATTATCGACGTGATGGCCAAAA----CGATCAACATCAAACTG 43
||| |||.|||||..|||.|| ||.|| |||||| .||| |
RBAM_030110__ 1 ATGAATGATCATCGAGATGACGG-CAGAAGCCGCGATCA--GTCA----G 43
BSNT_04911___ 44 AACCTTCACATACAGAACAGCAGAATACAGAAA--ACCAGAAGCTGATTG 91
|.|.|||||||||.|||| ||.||||||| |.|||.|||.|||..
RBAM_030110__ 44 ATCTTTCACATACGGAAC-----AAAACAGAAATGAACAGCAGCAGATCA 88
BSNT_04911___ 92 GACATTCTGAACAAGAATTGCTTGACGTGCCTGTGTCTTATGAAGCGG-- 139
|.|||...||.|..||..||||.||.|.|||.||.||..|.|||||||
RBAM_030110__ 89 GCCATCAGGAGCCCGAGCTGCTCGAAGGGCCCGTCTCGAAAGAAGCGGAA 138
BSNT_04911___ 140 --------GACGGCAGGAAACGGCTTCTGCACTAGAAATGGAAAAGCAAG 181
|.||||.|| .||| |||.|.||||
RBAM_030110__ 139 AACGAGATGGCGGCCGG-TACG------------GAATTTGAAA------ 169
BSNT_04911___ 182 AAACGGCT---GTGAAAAAAGAAAAGAAACGGAGAGCCGCATGGCTGAGC 228
|||||||| ||||||||||||||.||||||||||||||.|||||||||
RBAM_030110__ 170 AAACGGCTGCCGTGAAAAAAGAAAAAAAACGGAGAGCCGCTTGGCTGAGC 219
BSNT_04911___ 229 CCGATTTTAGGCGGTATTATCGGCGGGGGCCTCATGCTTGGCATCGCGCC 278
||||||||||||||.|||||||||||.||||||.||||||||||.|.|||
RBAM_030110__ 220 CCGATTTTAGGCGGCATTATCGGCGGCGGCCTCGTGCTTGGCATTGTGCC 269
BSNT_04911___ 279 TTATCTGCCGTCAGACCAAAATCAGGCGACCGAGACCGCTTCCGCAAATA 328
..|.||||||...||.||..||.| |||.||..|||.|||.|..|..|
RBAM_030110__ 270 AAACCTGCCGGGTGAGCAGCATAA---GACAGAAGCCGTTTCTGATACGA 316
BSNT_04911___ 329 AACAGGTGCAGTCTGATAATTTTACAACGGCGCCGATAACGAACGCATCA 378
||||.||.||||||...||||||||..|..||||..|.|..||..|.|||
RBAM_030110__ 317 AACAAGTTCAGTCTTCGAATTTTACGTCAACGCCTTTGAAAAATACCTCA 366
BSNT_04911___ 379 AACATCGCTGATATGGTAGAGGATTTAGAGCCTACGATTGTCGGAATCT- 427
|.|.|.||.|||||||||||.|||||.||||||.|||||||||||.|.|
RBAM_030110__ 367 AGCGTAGCGGATATGGTAGAAGATTTGGAGCCTGCGATTGTCGGAGTGTC 416
BSNT_04911___ 428 CAAATATCCAAACCTCTCAAAATAACACA-TTCGGCACAGGA-GGAGGCT 475
|||.|| ||||.|.||.||||..|.| || ||||| ||..|| ||.||.|
RBAM_030110__ 417 CAACTA-CCAAGCTTCGCAAAGCAGC-CAGTTCGG-ACTTGACGGCGGTT 463
BSNT_04911___ 476 CCAGCTCAGAAAGTGAAAGCGGAACCGGGTCAGGTGTTATTTTCAAAAAA 525
|.|||||.||||..||.|||||.||.||||||||.||.||.|||||||||
RBAM_030110__ 464 CAAGCTCTGAAACAGAGAGCGGCACGGGGTCAGGCGTCATCTTCAAAAAA 513
BSNT_04911___ 526 GACAGCAATAAAGCGTATATCATTACAAACAACCATGTCGTTGAAGGCGC 575
|||.||.|.||||||||.||||||||||||||.||||||||.|||||.||
RBAM_030110__ 514 GACGGCGAAAAAGCGTACATCATTACAAACAATCATGTCGTAGAAGGTGC 563
BSNT_04911___ 576 GAACAAGCTGACTGTTACGCTATACAACGGAGAAACGGAAACTGCCAAGC 625
||||||.|||.|.||.||.||.|||||.||..||||.|||||.||.||||
RBAM_030110__ 564 GAACAAACTGTCGGTCACTCTTTACAATGGGAAAACCGAAACGGCAAAGC 613
BSNT_04911___ 626 TTGTCGGCAGCGATACCATTACTGATTTGGCAGTTTTGGAAATCAGCAGC 675
|||||||.|..|||.||||.|.|||.|||||.||.||||||||||||...
RBAM_030110__ 614 TTGTCGGAAAGGATGCCATCAGTGACTTGGCTGTATTGGAAATCAGCTCG 663
BSNT_04911___ 676 AAGAACGTCAAAAAAGTGGCGAGCTTTGGTGATTCTTCACAGCTGCGCAC 725
...||.||||||||||.|||.|||||.||.|||||.||..||||.||||.
RBAM_030110__ 664 TCCAATGTCAAAAAAGCGGCCAGCTTCGGGGATTCCTCCAAGCTCCGCAT 713
BSNT_04911___ 726 TGGCGAAAAGGTAATCGCTATCGGTAACCCGCTCGGACAGCAGTTTTCCG 775
||.|||.||.||.||.||.|||||.|||||||||||.|||||||||||||
RBAM_030110__ 714 TGCCGATAAAGTGATTGCCATCGGCAACCCGCTCGGCCAGCAGTTTTCCG 763
BSNT_04911___ 776 GTACGGTGACACAAGGCATCATTAGCGGACTGAACCGGACAATTGATGTG 825
|.||.||.||||||||..||||.|||||.||||||.|.||..|.||.|..
RBAM_030110__ 764 GCACCGTCACACAAGGTGTCATCAGCGGGCTGAACAGAACGGTAGACGCC 813
BSNT_04911___ 826 GATACAACACAAGGGACGGTGGAAATGAACGTGCTGCAAACTGATGCAGC 875
||||||.|.|||||.||.|||||||||||||||.|.||.||.|||||.||
RBAM_030110__ 814 GATACATCCCAAGGCACAGTGGAAATGAACGTGATTCAGACGGATGCGGC 863
BSNT_04911___ 876 GATCAATCCGGGGAACAGCGGAGGCCCATTAATCAATGCAAGCGGCCAGG 925
|||.||.||.||.||||||||.|||||.||||||||..||||||||||.|
RBAM_030110__ 864 GATTAACCCCGGAAACAGCGGCGGCCCGTTAATCAACTCAAGCGGCCAAG 913
BSNT_04911___ 926 TCATCGGCATCAACAGCTTGAAGGTGAGCGAAAACGGCGTGGAATCACTT 975
|.|||||.|||||||||.||||.||.||.||||||||||||||.|||||.
RBAM_030110__ 914 TTATCGGGATCAACAGCATGAAAGTCAGTGAAAACGGCGTGGAGTCACTC 963
BSNT_04911___ 976 GGATTTGCGATCCCAAGCAATGATGTCGAGCCGATTGTTGACCAGCTGC- 1024
||.|||||.||.||.|||||||||||.||.|||||.||.||||||||||
RBAM_030110__ 964 GGCTTTGCCATTCCGAGCAATGATGTAGAACCGATAGTCGACCAGCTGCT 1013
BSNT_04911___ 1025 TGCAAAACGGGAAGGTGGACCGTCCGTTTTTAGGCGTGCAGATGATTGAC 1074
||||||| ||.||.||.||.||.||.||||||||.|||||||||||||||
RBAM_030110__ 1014 TGCAAAA-GGAAAAGTCGAGCGCCCATTTTTAGGTGTGCAGATGATTGAC 1062
BSNT_04911___ 1075 ATGTCACAAGTTCCTGAAACCTATCAGGAAAATACGCTCGGCCTGTTTGG 1124
|||.|.|||||.||.|||||||||||||||||.||||||||.|||||.||
RBAM_030110__ 1063 ATGGCGCAAGTGCCGGAAACCTATCAGGAAAACACGCTCGGACTGTTCGG 1112
BSNT_04911___ 1125 AGATCAATTGGGCAAAGGTGTTTATGTAAAAGAAGT----TCAAGCAAAT 1170
.||.||..||...||.||||||||.||||||||||| ||..||
RBAM_030110__ 1113 CGACCAGCTGTCTAAGGGTGTTTACGTAAAAGAAGTGCAGTCCGGC---- 1158
BSNT_04911___ 1171 TCGCCGGCAGAAAAAGCAGGTATTAAATCTGAGGATGTCATTGTCAAACT 1220
||||||||.|..|||||.||.||.|||||..|.||.||||||||..||.|
RBAM_030110__ 1159 TCGCCGGCTGCGAAAGCGGGCATCAAATCAAATGACGTCATTGTACAATT 1208
BSNT_04911___ 1221 AAACGGTAAAGACGTGGAAAGCAGTGCGGATATCCGTCAGATCCTTTACA 1270
.|||||.|||||.||.|..|||||.||.||||||.|.||||||.|.||.|
RBAM_030110__ 1209 GAACGGCAAAGATGTCGGCAGCAGCGCCGATATCAGACAGATCTTATATA 1258
BSNT_04911___ 1271 A--AGACTTAAAAGTCGGAGATAAAACAACAATCCAAGTGCTGCGAAAGG 1318
| || ||.|||| ||||.||||||||.||..|.|||||.||..|||..|
RBAM_030110__ 1259 ACCAG-CTGAAAA-TCGGCGATAAAACGACTGTTCAAGTTCTCAGAAGCG 1306
BSNT_04911___ 1319 GAA--AAACGAAAACGTTGAACGCGACACTGACCAAGCAGACAGAAAGCA 1366
||| ||| ||.|||.||||||..|||.|.||.||.||.||.||||||
RBAM_030110__ 1307 GAAGCAAA--AAGACGCTGAACGTCACATTAACAAAACAAACTGAAAGC- 1353
BSNT_04911___ 1367 GTTCAAGCTAA 1377
.||||||.|
RBAM_030110__ 1354 --GCAAGCTGA 1362
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.