Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04889 and RBAM_030080
See
Amino acid alignment /
Visit
BSNT_04889 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:26
# Commandline: needle
# -asequence dna-align/BSNT_04889.1.9828.seq
# -bsequence dna-align/RBAM_030080___yusX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04889-RBAM_030080___yusX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04889-RBAM_030080___yusX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04889
# 2: RBAM_030080___yusX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1893
# Identity: 1276/1893 (67.4%)
# Similarity: 1276/1893 (67.4%)
# Gaps: 207/1893 (10.9%)
# Score: 4068.0
#
#
#=======================================
BSNT_04889 1 ATGGCGCTGCA-AGGG---GTAGGCCAAAGATGGGATCTTGATTCATTTT 46
|||||..| | |||| |.||| |||.|||||||.|..|.||..|||
RBAM_030080__ 1 ATGGCATT--AGAGGGATTGAAGG--AAACATGGGATTTAAACTCCATTT 46
BSNT_04889 47 TTAAGGGCGGAAGCCAATCGGAAGAATT----CAAAGGTTATATTGAGAA 92
||.|||||||.||||..||||||||.|| ||| ||.|| |.||
RBAM_030080__ 47 TTGAGGGCGGGAGCCGGTCGGAAGAGTTTCAGCAA----TACAT--ACAA 90
BSNT_04889 93 GCTGTCACAAA--GTCTGCGTGCATTTCAAGACAGGACTGATGCGTTTCA 140
|...|||.||| .|||..|.||.||||||.|...|..|||.||||||..
RBAM_030080__ 91 GAGCTCAAAAATCATCTAAGCGCTTTTCAACATGCGGTTGAAGCGTTTAC 140
BSNT_04889 141 GGTGCCTGAATCGCCTGAAGAGGCTGAA------GGGCTGACCGCGTTGC 184
|||.|| |.||| |.|.||.|||| |.|||||.|....||.
RBAM_030080__ 141 GGTTCC---AACGC---ATGCGGATGAAAGCCGGGAGCTGATCAATCTGA 184
BSNT_04889 185 TTGATTTATTCGAACAGACATCCGTCAAGCTTCA-GCAGGCCGGCGCGTT 233
|||||...||.||||.|.|..|..|||.| .||| ||||||.||.|||||
RBAM_030080__ 185 TTGATAGGTTTGAACGGTCGGCGATCATG-ATCAGGCAGGCGGGAGCGTT 233
BSNT_04889 234 TGTTGCCTGCCTCCAGGCCCAGAATA-TCAATGATCAAAAGGC-----TA 277
.||.|.|||.||.|||||.|||||.| || |||||||.||.|| .|
RBAM_030080__ 234 CGTCGGCTGTCTTCAGGCTCAGAACACTC-ATGATCAGAAAGCGAATGAA 282
BSNT_04889 278 TAGAGCATCAGGCACTCATGAACCGGCTTTCCGCA--GATTTTCAATCGT 325
|.||| |||.|..||.||.|.|| |..||| ||||||.||||
RBAM_030080__ 283 TGGAG-----GGCGCGGATCAATCAGC--TGAGCAGTGATTTTAAATC-- 323
BSNT_04889 326 CGCTC--GTTACATTAGATCATAAACTTG------TGGACGTAGATCAAG 367
||||| ||.||..|.||..|||.||||| |.|||| ||
RBAM_030080__ 324 CGCTCTGGTCACCCTTGACGATACACTTGCCCGGATTGACG-------AG 366
BSNT_04889 368 AC-GTGTGGAATGAATTGCTAACAAAACCGGGA-TTAAGAGATATATCTT 415
.| ||.|||.|.||..||||...||||||||.| ||.|| .||||.
RBAM_030080__ 367 CCGGTCTGGGAGGAGCTGCTGCAAAAACCGGAACTTCAG-----GATCTC 411
BSNT_04889 416 ACATA----TTAAATGAAAGAAGACAGAGGGTTGCCGAAAAGCTTAGCCC 461
||||| ||||||||.||||||.|..||||....||.|||||.|||.|
RBAM_030080__ 412 ACATATGTTTTAAATGAGAGAAGAGACCGGGTCAAAGAGAAGCTCAGCGC 461
BSNT_04889 462 --CGGTAAAGAAAAACTGATCGGGAACCTTGCCGTGGACGGATATCACGC 509
|.| ||||||..|||||.|.|..|||.|||||.|||||.||||||||
RBAM_030080__ 462 TTCAG--AAGAAAGGCTGATTGAGGGCCTGGCCGTTGACGGCTATCACGC 509
BSNT_04889 510 TTGGAGTGACTTATACAATATGGTTGTCGGGAAAATGACGATCCCGTATG 559
.|||.|.|||.|.||.|||..||.||||||.|.|||||.|||.||||.||
RBAM_030080__ 510 ATGGGGCGACCTGTATAATGCGGCTGTCGGCAGAATGAAGATTCCGTTTG 559
BSNT_04889 560 GGGAAAATGGTGAAAACAAGCAATTGTCTGTCGGTCAGGCGGAGAATATG 609
.|||.||.| ||| ||||.|||||.||.|||||.||||||
RBAM_030080__ 560 AGGATAAAG---------AGC---TGTCGGTCGGCCAAGCGGAAAATATG 597
BSNT_04889 610 ATGGACCATCAAGACCGTACTG-TCAGA-----------AAAACAG--TA 645
||||..||.|..||||| .|.| ||||| .|||.|| ||
RBAM_030080__ 598 ATGGCGCACCCGGACCG-GCGGATCAGACGTCAAGTGTTCAAAGAGCTTA 646
BSNT_04889 646 TATGAACGTTTCCGCCAAGCTTGGGA--GAGCAAGCAAGATATTTTCAGC 693
||| ||||.|||.| ||| ||| |.||..|||||.||
RBAM_030080__ 647 -ATG------------AAGCGTGGAAAGGAG-AAG-AGGAGCTTTTCGGC 681
BSNT_04889 694 AACACGCTGAATCATTTGGCGGGATTCCGGCTC-GAAACCTATAAGGCGC 742
|.|||||||||.|||.||||.||.|||| ||.| ||||.||||||.||||
RBAM_030080__ 682 AGCACGCTGAACCATCTGGCCGGCTTCC-GCACGGAAATCTATAAAGCGC 730
BSNT_04889 743 GTGGCTGGGAGAATGTCCTGAAGGAACCGC-TGCAAATTAACAGGATGAA 791
|.||||||.|.|..|...||.|.||.|||| ||| .||.|||.|||||||
RBAM_030080__ 731 GGGGCTGGAAAAGCGCTTTGGAAGAGCCGCTTGC-GATCAACCGGATGAA 779
BSNT_04889 792 AAAAGAAACACTTGATACGATGTGGCAGGTCATCACTGAAAACAAGAAGC 841
|||||||||.||.|||...||||||||||||||.||.||..|.||.||||
RBAM_030080__ 780 AAAAGAAACGCTGGATGTCATGTGGCAGGTCATTACCGATCATAAAAAGC 829
BSNT_04889 842 CGTTCGTTCAGTTTT----------TGAACCGGAAAGCATCCATGCTCGG 881
| |||| ||||.||.||.||.||..|..|.||
RBAM_030080__ 830 C----------TTTTGCCGAATACCTGAATCGAAAGGCGTCTCTTTTAGG 869
BSNT_04889 882 CCTTGA-------AAAACTCAGCTGGTACGATGTCGAGGCACCGATC--- 921
.||||| || ||||||.|||||.||.||.||||||
RBAM_030080__ 870 GCTTGAGCGGTTGAA-------CTGGTATGATGTGGACGCGCCGATCGGC 912
BSNT_04889 922 --GGTTCTGACGGAAAGGTCTATTCGTATGATGAAGCCGCAAATATCATT 969
||.||.||..||| ||..|.|.|||||||||.||.|||.|.||.
RBAM_030080__ 913 GAGGCTCCGAAAGAA-----TACACATTTGATGAAGCGGCCAATCTGATC 957
BSNT_04889 970 ACCAGCCAGTTTTCAACGTTTGGCAAAAAGCTGTCCTCATTCACTGAAAA 1019
..||||||.|||||.|||||||||||||||||||||.||||..|.|||||
RBAM_030080__ 958 GTCAGCCAATTTTCGACGTTTGGCAAAAAGCTGTCCGCATTTTCGGAAAA 1007
BSNT_04889 1020 AGCGTTTCGGGA-CGGCTGGATTGAGGCGGAAGACAGGAGCGGAAAAAGA 1068
||||||.||.|| ||| |||||.||.|||||||||.|.|||||.|||.|.
RBAM_030080__ 1008 AGCGTTCCGTGATCGG-TGGATAGAAGCGGAAGACCGCAGCGGCAAACGG 1056
BSNT_04889 1069 GTCGGCGGCTTTTGCACCAGTTTTCCTGACAGCGGGGAATCCCGGATTTT 1118
||||||||.||.||||||||.|||||.||||||||.||||||||||||||
RBAM_030080__ 1057 GTCGGCGGTTTCTGCACCAGCTTTCCCGACAGCGGAGAATCCCGGATTTT 1106
BSNT_04889 1119 CATGACATTTTCGGGCAGCGCCTCAAATGTCTCTACTCTTGCGCATGAAC 1168
.|||||.|||||.||.|||||.||.|||||.||.||.||.||||||||.|
RBAM_030080__ 1107 TATGACGTTTTCCGGAAGCGCTTCGAATGTATCGACGCTGGCGCATGAGC 1156
BSNT_04889 1169 TCGGGCACGCGTTCCATCAGGAAGCAATGCTCGACGTCAGGCCGTTAAAC 1218
||||.|||||||||||||||||.||.|||||..|.||..|||.|.|.|||
RBAM_030080__ 1157 TCGGTCACGCGTTCCATCAGGAGGCCATGCTTCAAGTGCGGCAGCTGAAC 1206
BSNT_04889 1219 CGCTCCTACGCCATGAATGTTGCAGAAACAGCTTCAACGTTTGCAGAGAT 1268
.|..|||||||.||||||||.||.||||||||.||.||.|||||.||.||
RBAM_030080__ 1207 AGAGCCTACGCTATGAATGTGGCTGAAACAGCCTCGACCTTTGCGGAAAT 1256
BSNT_04889 1269 GATAGTCGCGGACGCGACTGTCCAGCAGGCCGAGACGAGGGAAGAGAAGC 1318
|||.|||||.|||||..||.|..|.||.||.|||||.|.|||.||.||||
RBAM_030080__ 1257 GATCGTCGCCGACGCCGCTTTGAAACAAGCGGAGACAAAGGATGAAAAGC 1306
BSNT_04889 1319 TTGTTCTT-CTGGAGGATAAAGTGCAAAGAAGTGTTGCGTTCTTCATGAA 1367
||||||| ||.||.||||||.|.||||.|||.||.||..|.||.|||||
RBAM_030080__ 1307 -TGTTCTTGCTTGAAGATAAAATTCAAAAAAGCGTAGCCATGTTTATGAA 1355
BSNT_04889 1368 CATTCACGCAAGATTTCTATTCGAAACGAGATTCTACGAGGAACGAAAGC 1417
.|||||.||.||||||.||||.||||||.|.||.||.||.||.||.||||
RBAM_030080__ 1356 TATTCATGCGAGATTTTTATTTGAAACGCGTTTTTATGAAGAGCGCAAGC 1405
BSNT_04889 1418 GGGGAGTGGTACCGGCCAGCCGCT-------TGAATGAGCTGATGGAAGA 1460
.|||.||.||.||| ||| |||||||.||||||||||.
RBAM_030080__ 1406 AGGGCGTCGTTCCG-------GCTGAGAAACTGAATGAACTGATGGAAGC 1448
BSNT_04889 1461 GGCACAAAGAGAGGCATACTGCAATGCGTTAGAAGAATATCATCCGCTTT 1510
|||.||.|.|||.||.|..|||.||.|.||||..||.||.||.||.|.||
RBAM_030080__ 1449 GGCGCAGAAAGAAGCGTTTTGCGATTCATTAGGGGAGTACCACCCTCATT 1498
BSNT_04889 1511 TTTGGGCATCAAAACTTCACTTTCACATCACGAGGGTGCCGTTTTACAAT 1560
|.|||||.||.|||||.||.|||||.||.|||.|.||||||||||||||.
RBAM_030080__ 1499 TCTGGGCGTCGAAACTGCATTTTCATATTACGGGAGTGCCGTTTTACAAC 1548
BSNT_04889 1561 TTCCCTTATACATTCGGCTACCTATTTTCTCTTGGCATTTACGC----GC 1606
||.||.|||||.|||||.|||.|||||||.|||||.||.||.|| ||
RBAM_030080__ 1549 TTTCCGTATACGTTCGGTTACTTATTTTCGCTTGGAATATATGCAAGAGC 1598
BSNT_04889 1607 TGGCGCTTGAAGAAAAAAATGCATTTGAAGAGAAGTATATGGCGCTATTG 1656
| |||...|||||....|..||||||||.||.|||||.|||||.|||
RBAM_030080__ 1599 T----CTTCGGGAAAACGCGGATTTTGAAGAAAAATATATCGCGCTTTTG 1644
BSNT_04889 1657 CGCGATACTGCTTCTATGACAGTGGAGGATTTGGCGATGAAGCATTTGGG 1706
.|.||.||.|||||.|||||.||.||||||||||||||||||||..|.||
RBAM_030080__ 1645 TGTGACACGGCTTCGATGACTGTTGAGGATTTGGCGATGAAGCACCTTGG 1694
BSNT_04889 1707 CGCTGACATCACGAAGCGTGATTTTTGGGAGAATGCCATCAAGCTGGCTG 1756
.||.||..|.|||.|.||....||||||||..|.||..||...||.||.|
RBAM_030080__ 1695 AGCGGATCTGACGGAACGGTCGTTTTGGGAAGACGCGGTCCGCCTTGCCG 1744
BSNT_04889 1757 TGCGTGA--CGCCGAAACCTTTTTGCAAATGACCGAATCTTAA 1797
|.|..|| .||.|.|| |||||..|..||||.||||..
RBAM_030080__ 1745 TACAGGATGTGCAGGAA--TTTTTAGAGCTGACTGAATGA--- 1782
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.