Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04882 and RBAM_030000
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_04882.1.9828.seq
# -bsequence dna-align/RBAM_030000___yusR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04882-RBAM_030000___yusR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04882-RBAM_030000___yusR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04882
# 2: RBAM_030000___yusR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 792
# Identity: 515/792 (65.0%)
# Similarity: 515/792 (65.0%)
# Gaps: 102/792 (12.9%)
# Score: 1577.0
#
#
#=======================================
BSNT_04882 1 ATGAATGTCTTGAACAAAATA-----GCTCTCGTAACGGGGGGCGGCACA 45
||||||.| ||||.||| ||.||.||.||.||.|||||.|||
RBAM_030000__ 1 ATGAATTT-----ACAACATAAAACGGCACTGGTCACAGGCGGCGGTACA 45
BSNT_04882 46 GGAATCGGAAAAGCAGCCAGTATGGAATTGGCAAAGCGCGGGGCGATTGT 95
||||||||||.|||.||..|..|.|..||.|||||.||.||.|||..|||
RBAM_030000__ 46 GGAATCGGAAGAGCGGCGTGCCTTGCCTTAGCAAAACGGGGAGCGGCTGT 95
BSNT_04882 96 GGCGGTGAATTATTCACGCTCGCAATCAGAAGCGGAGGAAACAGTGGAAA 145
.|...|.||.|||||||..||..||.|.||||||||..||||.|..||||
RBAM_030000__ 96 TGTCATTAACTATTCACATTCAAAAACGGAAGCGGAACAAACGGCAGAAA 145
BSNT_04882 146 AGATTCGAAAAGCTGGCGGGCAAGCCTTCGCCATCCAAGCAGATGTATCT 195
..||...||||||.|||||.||.||..|..||||.|||||.||.||.|||
RBAM_030000__ 146 TCATAATAAAAGCAGGCGGACACGCGATGACCATTCAAGCGGACGTTTCT 195
BSNT_04882 196 AAAAACA-----GCGACGTGCAG-GATATGGTTCAAACAATCGTGAAAAC 239
|.|.||| ||| || ||.||||| .||| |||
RBAM_030000__ 196 ATAGACAAACAGGCG------AGAGACATGGT--GAAC------GAA--- 228
BSNT_04882 240 ATACGGC---CCGATT--GA-----TGTTTTA---GTCAACAATGCCAGC 276
.|||| |||||| || ||.|||| ||.||.|||||.|||
RBAM_030000__ 229 --GCGGCCAGCCGATTCGGAAGCCTTGATTTACTCGTAAATAATGCGAGC 276
BSNT_04882 277 ATTACACGGCATATTCCAATGGATGATCTTGAGGCTGCGACAGAAGACGT 326
||.||..|.||||||||..|..|||||.|.||..||||.||..||||.||
RBAM_030000__ 277 ATCACCAGACATATTCCGCTTCATGATTTGGAATCTGCAACGAAAGAAGT 326
BSNT_04882 327 CTGGGATGAGCTGTACGCCGTCAATGTGAAAGGGATGTTTTTCTGCGC-- 374
.||||||||..|.|..||.||||||||.||.|||||||||...|||||
RBAM_030000__ 327 ATGGGATGAATTATTTGCTGTCAATGTAAACGGGATGTTTCATTGCGCAA 376
BSNT_04882 375 --GCGGGCAGTGGTTCCGT-TC--ATGAAGAAAAGC--AAGGCCGGGGCG 417
|| ||||| ||| || |||| |||||| |||.|.||.||.
RBAM_030000__ 377 GAGC-GGCAG------CGTCTCATATGA--AAAAGCAAAAGTCAGGCGCT 417
BSNT_04882 418 ATTGTAAACGTCGGCAGCATTGCAGGGGTAACTGGTGCCGGCTCATCTAT 467
|||||.||.|||||.|||||.||.||..|.||.||.||.||.||.||..|
RBAM_030000__ 418 ATTGTGAATGTCGGGAGCATCGCCGGCCTGACGGGAGCGGGTTCTTCCCT 467
BSNT_04882 468 GCCTTACGCAGTATCAAAATCGGCGGTGCACGGTTTAACGAAATCATTGG 517
.||.||.||.||.||.|||.||||||||||.||..|.||.||||||||||
RBAM_030000__ 468 TCCGTATGCCGTTTCCAAAGCGGCGGTGCATGGCCTGACAAAATCATTGG 517
BSNT_04882 518 CTCACGCCTTAGCGCCTGAAATCAGAGTGAGCGGTGTAGCACCAGGAGCT 567
|.||.||..|.|||||.||.|||.|.||..||.||||.||.||.|||||.
RBAM_030000__ 518 CCCATGCGCTGGCGCCGGACATCCGTGTATGCTGTGTCGCGCCCGGAGCC 567
BSNT_04882 568 GTGGCAACGAGATGGTGGGCTGGCCGGGAAGAAAAAATGAAAAGCATGAT 617
||.|||||.|||||||||.|.||.||||||||.|..||| .||
RBAM_030000__ 568 GTTGCAACAAGATGGTGGACGGGTCGGGAAGAGACGATG--------TAT 609
BSNT_04882 618 TGGCT----------CTTTGCCGCTGCAGTGTATTGCTGAACCAGAGGA- 656
.|||| ||| ||||||.|..|.||.||||..||.|||||
RBAM_030000__ 610 CGGCTTGCCGGAAGCCTT--CCGCTGGAACGGATCGCTGCTCCGGAGGAT 657
BSNT_04882 657 ---GGTTGCCAAATTGATTTGTTCATTAGTTGAACAGGAATCACTCACAG 703
||| .||.|||||||.||..|..|.||.|||||||||||.||.|
RBAM_030000__ 658 ATCGGT----GAACTGATTTGCTCTGTGCTGGAGCAGGAATCACTGACGG 703
BSNT_04882 704 GCCAAATTATCACA----ATTGACAGCGGACAGACGCTGTAA 741
|.|||||.||.||| ||| ||||.||||||.|||.|
RBAM_030000__ 704 GACAAATCATAACAGCCGATT----GCGGCCAGACGATGTGA 741
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