Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04876 and RBAM_029970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:25
# Commandline: needle
# -asequence dna-align/BSNT_04876___yusO.1.9828.seq
# -bsequence dna-align/RBAM_029970___yusO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04876___yusO-RBAM_029970___yusO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04876___yusO-RBAM_029970___yusO.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04876___yusO
# 2: RBAM_029970___yusO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 499
# Identity: 354/499 (70.9%)
# Similarity: 354/499 (70.9%)
# Gaps: 38/499 ( 7.6%)
# Score: 1184.0
#
#
#=======================================
BSNT_04876___ 1 ATGAAGAGTGCGGATCAGTTAATGTCCGATATTCAATTATCGCTTCAGGC 50
|||||.|..||||||||.|...||||.||.||.||...|||.||||||.|
RBAM_029970__ 1 ATGAAAAACGCGGATCAATATGTGTCTGACATCCAGAAATCTCTTCAGAC 50
BSNT_04876___ 51 GCTCTTTCAAAAGATACAGCCTGAAATGCTGGAAAGCATGGAGAAACA-- 98
|||..|.|||||.||||||||.||||||.||||||||||||..|||||
RBAM_029970__ 51 GCTGCTGCAAAACATACAGCCCGAAATGGTGGAAAGCATGGCAAAACACG 100
BSNT_04876___ 99 AGGTGTCACCCCAGCGCAGCTGTTTGTGCTGGCCAGCCTAAAGAAACACG 148
||||| ||.||.||.||..|.|||||..|.||||||||.||.|||||||
RBAM_029970__ 101 AGGTG--ACGCCTGCCCAATTATTTGTTTTAGCCAGCCTGAAAAAACACG 148
BSNT_04876___ 149 GCAGCCTCAAAATTTCTGAAATTGCCGAGCGTATGGAGGTGAAGCCAAGC 198
|.|||..||||.||||.||||||||.||.||.||||||||.|||||.|||
RBAM_029970__ 149 GGAGCTGCAAAGTTTCCGAAATTGCGGAACGCATGGAGGTAAAGCCGAGC 198
BSNT_04876___ 199 GCGGTGACGCTGATGGCAGATCGCCTTGAACAAAAAAATCTTATCGCCAG 248
||.||||||||||||||.||.|||||.|||||||||...|||||||.|.|
RBAM_029970__ 199 GCAGTGACGCTGATGGCCGACCGCCTCGAACAAAAAGGACTTATCGTCCG 248
BSNT_04876___ 249 AACACACAACACA-AAAGACAGGCGAGTGATTGATCTCAGTCTTACTGAC 297
.|.|||.||| || .|||||||.||.||.||.||..||||.||.||..|.
RBAM_029970__ 249 CAAACATAAC-CAGCAAGACAGACGCGTCATCGACATCAGCCTCACCAAA 297
BSNT_04876___ 298 GAAGGAGACAGAAAGTTCGAGGAGGTTCTGG-CGGGCAGAAAAGCCATTA 346
.||||.||.|.|||.|||||.||.|||.||| .|||| |.|||||.||..
RBAM_029970__ 298 AAAGGCGAAACAAAATTCGAAGATGTTGTGGAAGGGC-GGAAAGCGATAC 346
BSNT_04876___ 347 TGGCGCGCTATCTTTCCTTTTTGACGGAGGAGGAAATGCTGCAGGCGGCG 396
|||||||..|.||.|||.||.||||.||.||.|||.||.|.|||.|.|.|
RBAM_029970__ 347 TGGCGCGAAACCTGTCCGTTCTGACTGACGATGAACTGATTCAGTCCGTG 396
BSNT_04876___ 397 CATATTA-CAGCAAAGCTCGCACAAGCAGC--AGAA-ACG-----GATGA 437
.|.||.| |.|||||| |.||..||||.|| |||| ||| |||.|
RBAM_029970__ 397 AACATCATCCGCAAAG-TAGCGGAAGCCGCCGAGAATACGCGGCTGATCA 445
BSNT_04876___ 438 AAAGCAAAAC--AT-GAAAAGAG--------GAAACGGATGA------- 468
|||..||||| || |||||||| ||||| ||||
RBAM_029970__ 446 AAAAGAAAACGAATAGAAAAGAGGAGCTGCCGAAAC--ATGAGCATTGA 492
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