Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04874 and RBAM_029960

See Amino acid alignment / Visit BSNT_04874 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:25
# Commandline: needle
#    -asequence dna-align/BSNT_04874___yusN.1.9828.seq
#    -bsequence dna-align/RBAM_029960___yusN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04874___yusN-RBAM_029960___yusN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04874___yusN-RBAM_029960___yusN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04874___yusN
# 2: RBAM_029960___yusN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 333
# Identity:     272/333 (81.7%)
# Similarity:   272/333 (81.7%)
# Gaps:           0/333 ( 0.0%)
# Score: 1116.0
# 
#
#=======================================

BSNT_04874___      1 ATGAATCAGCAAAATCAAAAAATTAGCAATCCGCAGACACCTGTACCGAC     50
                     |||.|.|||||||||||||||||.|..||||||||.||.||.||.||.|.
RBAM_029960__      1 ATGGAACAGCAAAATCAAAAAATCACGAATCCGCAAACGCCAGTGCCCAA     50

BSNT_04874___     51 AACATCGGAAATGAATGACAGAGATTTCGTCAACGAATTGCTGACAACCG    100
                     .||..||.||||||||||||||||.||.||.||.||..|||||||.||.|
RBAM_029960__     51 TACGGCGCAAATGAATGACAGAGACTTGGTGAATGAGCTGCTGACGACGG    100

BSNT_04874___    101 AAAAATACATGACAACAGCTTATTGCACTGCCTTGCACGAATTCAGCCAC    150
                     ||||||||||.||..|..|.||||||||.|||.|||||||.|||||||||
RBAM_029960__    101 AAAAATACATCACGGCTTCATATTGCACAGCCCTGCACGAGTTCAGCCAC    150

BSNT_04874___    151 GAGTCTCTTTATCAGGATATTCAATCCATTTTTGATGAGTCACAAAAAGC    200
                     ||||||||||||||.||||||||..|.|||||.|||||||||||||||||
RBAM_029960__    151 GAGTCTCTTTATCAAGATATTCAGGCGATTTTCGATGAGTCACAAAAAGC    200

BSNT_04874___    201 GCAAAGAAAACTATATGATCTCATGTTCCAATATGGATGGTATTCTGTTG    250
                     ||||||||.|.||||.|||.|.|||||.|||.||||.||||||||..|||
RBAM_029960__    201 GCAAAGAAGATTATACGATGTGATGTTTCAAAATGGCTGGTATTCCATTG    250

BSNT_04874___    251 AAGCGGAGGATGCACAAAAGCTGCAGCAGTCCTATCAAAAATTCCAGCAG    300
                     ||||.|..|||.|.||||||||.|||||.||.|||||.||.||||.||||
RBAM_029960__    251 AAGCAGCCGATACCCAAAAGCTTCAGCAATCGTATCAGAAGTTCCGGCAG    300

BSNT_04874___    301 ACCATTCAGCAGCAGTCTCCTTATCAGCAATAA    333
                     ||||||||||||||||||||.||.|||||.|||
RBAM_029960__    301 ACCATTCAGCAGCAGTCTCCCTACCAGCAGTAA    333


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