Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04868 and RBAM_029920
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:24
# Commandline: needle
# -asequence dna-align/BSNT_04868___fadN.1.9828.seq
# -bsequence dna-align/RBAM_029920___yusL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04868___fadN-RBAM_029920___yusL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04868___fadN-RBAM_029920___yusL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04868___fadN
# 2: RBAM_029920___yusL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2491
# Identity: 1832/2491 (73.5%)
# Similarity: 1832/2491 (73.5%)
# Gaps: 164/2491 ( 6.6%)
# Score: 6823.5
#
#
#=======================================
BSNT_04868___ 1 ATGAAAGAAGAAACGAGTTTCATTTTTTTTGGTCAAAAAATGAATGATTA 50
RBAM_029920__ 0 -------------------------------------------------- 0
BSNT_04868___ 51 TTCATTCAATGTTCAAGGGGGATATCTCATGCACAA----ACACATTCGG 96
|||||||| |.|.| |
RBAM_029920__ 1 ----------------------------ATGCACAAGTTTATAAA----G 18
BSNT_04868___ 97 AAGGCAGCCGTTTTAGGATCGGGGGTAATGGGTTCCGGGATTGCGGCGCA 146
||.|||||||||.|.|||||.||.||.|||||.|||||.|||||.|||||
RBAM_029920__ 19 AAAGCAGCCGTTCTCGGATCAGGCGTCATGGGGTCCGGAATTGCCGCGCA 68
BSNT_04868___ 147 TTTGGCTAACATCGGAATTCCTGTCCTGCTGCTAGATATTGTGCCGAACG 196
.||||||||||||||||||||.|||||||||||.|||||||||||.||||
RBAM_029920__ 69 CTTGGCTAACATCGGAATTCCCGTCCTGCTGCTTGATATTGTGCCAAACG 118
BSNT_04868___ 197 ATTTGACAAAGGA--AGAGGAAAAAAAGGGGCTGAC----GAAGGACAGT 240
|..|||||||||| |||.||||||| |||||||| ||| ||.
RBAM_029920__ 119 AGCTGACAAAGGATGAGATGAAAAAA--GGGCTGACATTAGAA----AGC 162
BSNT_04868___ 241 CCGGAGATGCGCAGCAGGCTGAGCCGGCAGGCGGTGAAAAAACTGCTGAA 290
||||||.|.||||||||.||||||||...|||..||.||||.||||||||
RBAM_029920__ 163 CCGGAGGTCCGCAGCAGACTGAGCCGATCGGCCATGCAAAAGCTGCTGAA 212
BSNT_04868___ 291 ACAAAAGCCCGCTCCCCTCACATCAGCGAAAAATACCTC--CTATATTAC 338
.|||||.||.||.||.||.||.||.||....||| ||| ||||||.||
RBAM_029920__ 213 GCAAAAACCGGCGCCGCTGACTTCGGCTGCCAAT--CTCGACTATATAAC 260
BSNT_04868___ 339 ACCGGGCAATCTGGAGGATGATGCAGAAAAACTGAAAGAAGCAGATTGGA 388
..||||.|||.||||.|||||.||||...||.||||.||.||.|||||||
RBAM_029920__ 261 GGCGGGGAATTTGGAAGATGACGCAGCTCAATTGAAGGATGCTGATTGGA 310
BSNT_04868___ 389 TTATTGAGGTCGTTGTCGAAAACCTTGAAGTCAAAAAGAAAATTTTCGCT 438
|||||||.|||||.||||||||.|||||.||.|||||..|.||||||.|.
RBAM_029920__ 311 TTATTGAAGTCGTCGTCGAAAATCTTGACGTAAAAAAACAGATTTTCTCA 360
BSNT_04868___ 439 CTTGTGGATGAACATCGAAAGACTGGAAGCATCGTCTCAAGCAACACATC 488
||.||.||||||.|.||.||..|.|||||||||||.||.|||||.||.||
RBAM_029920__ 361 CTCGTTGATGAATACCGGAAACCGGGAAGCATCGTGTCGAGCAATACGTC 410
BSNT_04868___ 489 CGGCATATCAGTGCA-GGAAATGGCTGAAGGCCGGTCGGATGATTTTAAA 537
|||.||.||.|| || ..|||||||.||||||||.||.|..|||||||||
RBAM_029920__ 411 CGGTATCTCCGT-CACAAAAATGGCGGAAGGCCGATCTGCCGATTTTAAA 459
BSNT_04868___ 538 GCCCATTTTCTCGGAACGCATTTTTTTAATCCCGCACGCTATTTAAAGCT 587
||.|||||..|.|||||.|||||.||||||||.||.|||||.||||||||
RBAM_029920__ 460 GCTCATTTCTTAGGAACCCATTTCTTTAATCCGGCCCGCTACTTAAAGCT 509
BSNT_04868___ 588 GCTGGAGATCATTCCGATTAAGGAAACGGATCCTGATATTTTAAAGTTTA 637
.|||||.||||||||||||.|||||||.||||||||..|..|..||||||
RBAM_029920__ 510 TCTGGAAATCATTCCGATTCAGGAAACAGATCCTGACGTGCTGGAGTTTA 559
BSNT_04868___ 638 TGAAAGCTTTCGGAGAAAATGTCCTCGGGAAAGGCGTTGTTACAGCAAAG 687
|||...|.||.|.||||||....|||||||||||.||.||.|..|||||.
RBAM_029920__ 560 TGACTTCATTTGCAGAAAACACGCTCGGGAAAGGGGTCGTCATCGCAAAA 609
BSNT_04868___ 688 GACACACCGAACTTTATCGCAAACCGAATCGGGACTTACGGGCTTCTCGT 737
|||||.||.|||||||||||.|||||.|||||.||.|||||.||.||.||
RBAM_029920__ 610 GACACGCCTAACTTTATCGCCAACCGCATCGGTACGTACGGCCTGCTGGT 659
BSNT_04868___ 738 GACAGTCCAAGAAATGCTGAAAGGCGGTT-ATCAGG--------TCGGGG 778
.||.||...||||||||| || .||.|| ||||.|
RBAM_029920__ 660 CACGGTAAGAGAAATGCT---------TTCTTCCGGCTGCCGCATCGGCG 700
BSNT_04868___ 779 AGGTTGATTCGATCACAGGACCGCTGATCGGCAGGCCGAAAAGCGCCACC 828
||||.||..||.|.||.||.||..||||||||||.|||||||||||.|||
RBAM_029920__ 701 AGGTGGACACGGTGACCGGGCCTTTGATCGGCAGACCGAAAAGCGCGACC 750
BSNT_04868___ 829 TTTAGAACGCTTGATGTGGTCGGCCTCGATACATTCGCCCACGTTGCCCG 878
||.|||||.|||||.||.||.||.||.|||||.||||||||.||.||...
RBAM_029920__ 751 TTCAGAACCCTTGACGTTGTGGGGCTTGATACTTTCGCCCATGTGGCAAA 800
BSNT_04868___ 879 AAATGTGTATGACAAAGCTGATGGCGATGAAAAAGAAGTGTTTCGCCTTC 928
||||||||||||.|||||.||.||||.|||||||||..|||||...||||
RBAM_029920__ 801 AAATGTGTATGATAAAGCCGACGGCGCTGAAAAAGACATGTTTAAGCTTC 850
BSNT_04868___ 929 C--AAGCTTCATGAACGATATGCTGGAAAAAGGGTGGATCGGAAGCAAGG 976
| || ||.|||||.||.||||||.||||....|||.|.||.|||||..
RBAM_029920__ 851 CTGAA--TTTATGAATGACATGCTGAAAAACAATTGGCTGGGCAGCAAAT 898
BSNT_04868___ 977 CCGGCCAAGGCTTTTATAAAAAAGAAGGAAAAACGATTTATGAGCTTGAC 1026
|.||||||||.|||||.|||||||||||.|||||.||.|||||.||.||.
RBAM_029920__ 899 CAGGCCAAGGTTTTTACAAAAAAGAAGGTAAAACAATATATGAACTCGAT 948
BSNT_04868___ 1027 CCAGTGACGCTTACTTACGGCGAGCGGACAAAAATGAAATCACCGGCACT 1076
||..||||..|.||.|||||.|||||..|.||||||||..||||.||..|
RBAM_029920__ 949 CCGCTGACCATGACATACGGTGAGCGCTCGAAAATGAAGACACCCGCTTT 998
BSNT_04868___ 1077 TGAAGCGGCAAAACAGGCAAAAGGGACAAAAGCCAAAATGAAAGCGCTTA 1126
.|||||.||.|||||||||||.||..|.||||.|||||||||||||||||
RBAM_029920__ 999 AGAAGCCGCCAAACAGGCAAAGGGTGCCAAAGGCAAAATGAAAGCGCTTA 1048
BSNT_04868___ 1127 TTTATTCGGATGACAGGGCCGGCCGTTTGCTGTGGAATATCACTTCTCAA 1176
|.||.||.||||||.|.|||||.||..||||.||||||||.||.||.|||
RBAM_029920__ 1049 TATACTCTGATGACCGCGCCGGGCGCCTGCTTTGGAATATTACATCGCAA 1098
BSNT_04868___ 1177 ACCCTGCTT-TACTCAGCCGAGCTGCTTGGCGAGATTGCCGATGATATTC 1225
||.|| ||| |||||||||..|||..|.||.|||||.||.||||||||..
RBAM_029920__ 1099 ACACT-CTTATACTCAGCCCGGCTTTTAGGTGAGATCGCTGATGATATCA 1147
BSNT_04868___ 1226 ATGCGATTGACCAAGCCATGAAGTGGGGATTCGGCTGGGAACTGGGACCT 1275
|.||.|||||..|.||||||||.|||||.|||||.|||||.||.|||||.
RBAM_029920__ 1148 AAGCAATTGATGACGCCATGAAATGGGGCTTCGGATGGGAGCTCGGACCG 1197
BSNT_04868___ 1276 TTTGAGATGTGGGACGCCATCGGCCTCAAGCAGTCAGCGGAAAAGCTTG- 1324
||||||||||||||.|||||||||.|||...|.||||||||...|||.|
RBAM_029920__ 1198 TTTGAGATGTGGGATGCCATCGGCGTCAGAAAATCAGCGGAGCGGCTCGA 1247
BSNT_04868___ 1325 AGCAGCTTGGAGCAGATATGCCTGGCTGGATAAAAGAGATGCTGGATAAA 1374
||.|| ..||.||||...|.||.||||||.|.|||||.|||||.|||.|.
RBAM_029920__ 1248 AGAAG-AAGGCGCAGCACTCCCCGGCTGGGTGAAAGAAATGCTTGATCAG 1296
BSNT_04868___ 1375 GGAAATGAAACCTTCTACATCAAAGAGAACGGAACGGTATTTTATTAT-- 1422
||..|||||||.||.||.||.||.||.||||||||...||||||.|||
RBAM_029920__ 1297 GGCCATGAAACATTTTATATGAAGGAAAACGGAACACCATTTTACTATTC 1346
BSNT_04868___ 1423 -GACCGCGGCGAATACAGAGCCGTGAAAGAAAACAAAAAACGAATTCA-T 1470
|| ||||.|||||||.||.|||||||||||....|||||.| ||| .
RBAM_029920__ 1347 AGA---CGGCCAATACAGGGCTGTGAAAGAAAATCCGAAACGGA-TCAGC 1392
BSNT_04868___ 1471 TTACAAGCACTTAAAGAAACAAAAGGCGTGATTGCGAAAAACAGCGGAGC 1520
.|.|||.|..|.|||||||||||||||||.||..|.||||||||||||||
RBAM_029920__ 1393 CTGCAAACGTTAAAAGAAACAAAAGGCGTTATCACTAAAAACAGCGGAGC 1442
BSNT_04868___ 1521 AAGCTTAATTGACCTTGGAGATGATGTGGCCCTTCTTGAATTTCATTCGA 1570
|||..|.|||||.||.||.||||||||.||.||.||.|||||||||.|||
RBAM_029920__ 1443 AAGTCTGATTGATCTCGGCGATGATGTCGCGCTGCTGGAATTTCATACGA 1492
BSNT_04868___ 1571 AAAGCAATGCGATCGGCCTCGATATCATTCAAATGATCCACAAAG-GATT 1619
|||||||.|||||||||.|.||.||.|||||.|||||..||||.| |.||
RBAM_029920__ 1493 AAAGCAACGCGATCGGCTTAGACATTATTCAGATGATTGACAATGCGCTT 1542
BSNT_04868___ 1620 AGAGGAAACAGAACGGAATTACAAGGGCCTTGTCATCGGCAATCAAGGGA 1669
||||||||.||.||||||||.||.||.|||||||||||.||.|||||.|
RBAM_029920__ 1543 -GAGGAAACGGAGCGGAATTATAAAGGTCTTGTCATCGGTAACCAAGGCA 1591
BSNT_04868___ 1670 AAAATTTCTGCGTCGGCGCGAATCTCGCCATGATCTTAATGGAAGTCCAA 1719
.|.|||||||||..||.||.||.||.||.|||||.||.|||||||..||.
RBAM_029920__ 1592 GACATTTCTGCGCGGGGGCAAACCTTGCGATGATTTTGATGGAAGCTCAG 1641
BSNT_04868___ 1720 GATGACAACTTTTTGGAAGTTGATTTTGTGATACGCCGTTTTCAGGAGAC 1769
|||||.|||||..|||||||.||||||||.||.||||||||||||.||||
RBAM_029920__ 1642 GATGATAACTTCATGGAAGTCGATTTTGTCATCCGCCGTTTTCAGCAGAC 1691
BSNT_04868___ 1770 GATGATGAAGATCAAATACAGTGCGAAACCGGTTGTCGCCGCGCCATTTG 1819
||||.||||.|||||||||||.||.|||||.||||||||.||||||||.|
RBAM_029920__ 1692 GATGCTGAACATCAAATACAGCGCTAAACCCGTTGTCGCGGCGCCATTCG 1741
BSNT_04868___ 1820 GCATGACGCTCGGCGGAGGAACGGAAGTATGCCTGCCGGCGGCGCGCATT 1869
|.|||||.||||||||.||.||||||||.||.||.||||||||.|||.||
RBAM_029920__ 1742 GGATGACACTCGGCGGCGGCACGGAAGTCTGTCTCCCGGCGGCACGCGTT 1791
BSNT_04868___ 1870 CAAGCGGCAAGCGAAGCCTATATGGGCCTTGTTGAATCAGGTGTCGGCCT 1919
||.|||||.||||||.|.||||||||.|||||||||.|.||.||||||||
RBAM_029920__ 1792 CAGGCGGCGAGCGAATCGTATATGGGTCTTGTTGAAACCGGCGTCGGCCT 1841
BSNT_04868___ 1920 CATCCCTGGCGGAGGGGGAAACAAAGAGCTGTACATCAATCATCTTCG-C 1968
.||.||.|||||.||.||||||||||||||||||||.|||.|| ||.| |
RBAM_029920__ 1842 TATTCCGGGCGGCGGAGGAAACAAAGAGCTGTACATGAATTAT-TTGGAC 1890
BSNT_04868___ 1969 CGCGGCCTTGATCCGATGAATGCGGCAATGAAAACATTTGAAACGATTGC 2018
.||||...|||.|.||||.|.||.||.||.|||||.||.|||||.||.||
RBAM_029920__ 1891 GGCGGAAGTGAACTGATGGACGCAGCGATTAAAACCTTCGAAACAATCGC 1940
BSNT_04868___ 2019 GATGGCGAAAGTGTCCGTTTCCGCTCAAGAGGCTCGTGAGATGAACATCT 2068
|.|.||.||||||||||.|||.||.||.||.||.|||||.|||||.||.|
RBAM_029920__ 1941 GCTTGCCAAAGTGTCCGGTTCGGCACACGAAGCCCGTGATATGAAGATTT 1990
BSNT_04868___ 2069 TAAAAGAAACGGATCAG-----ATCAGCGTGAATCAAGACCACCTGTTAT 2113
|....| ||| ||| ||||||.|||||||.||.||||||.|..
RBAM_029920__ 1991 TGTCCG---CGG--CAGACCGTATCAGCATGAATCAGGATCACCTGCTGC 2035
BSNT_04868___ 2114 ACGATGCGAAGCAGCTGGCCGCATCTCTATACGATACCGGCTGGCGGCCG 2163
||||||||||.||||||||.||.||..||||.||.|.|||.|..||.|||
RBAM_029920__ 2036 ACGATGCGAAACAGCTGGCTGCTTCCTTATATGACAGCGGATACCGCCCG 2085
BSNT_04868___ 2164 CCTG------TAAAAGAAAAGGTCAAGGTGCCGGGAGAAACCGGTTATGC 2207
|||| .|||||..||.|||| ||||| ||||||||.|.|||
RBAM_029920__ 2086 CCTGCCCGCAAAAAAGTGAAAGTCA-----CCGGG-GAAACCGGATGTGC 2129
BSNT_04868___ 2208 GGCACTCTTGCTTGGCGCTGAGCAGATGAAGCTGTCCGGCTATATATCTG 2257
||||.|..||||.||.||.||.||.||||..|.|||.||.|||.||||.|
RBAM_029920__ 2130 GGCATTACTGCTCGGAGCAGACCAAATGAGACGGTCGGGTTATTTATCCG 2179
BSNT_04868___ 2258 AGCATGATTTCAAGATCGCGAAAAAACTCGCTTATGTCATTGCGGGCGGA 2307
|.||.|||.|.|||||.|||||.||.||.||..||||||||||.||||||
RBAM_029920__ 2180 ATCACGATATGAAGATTGCGAAGAAGCTGGCCCATGTCATTGCCGGCGGA 2229
BSNT_04868___ 2308 AAAGTGCCGTTTGGTACAGAGGTTGATGAAGAGTATTTATTGGAGATCGA 2357
|.|||.|||||.||.||.||||||...|||||.||||||.|.|||||.||
RBAM_029920__ 2230 AGAGTCCCGTTCGGCACGGAGGTTTCAGAAGAATATTTACTTGAGATTGA 2279
BSNT_04868___ 2358 AAGAGAAGCGTTTTTGAGTTTGGCAGGAGAAGCAAAATCTCAAGCGAGAA 2407
|||||||||.|||||.||..|.||.||.||.||.||||||||||||||||
RBAM_029920__ 2280 AAGAGAAGCCTTTTTAAGCCTCGCTGGCGAGGCGAAATCTCAAGCGAGAA 2329
BSNT_04868___ 2408 TGCAGCATATGCTTGTGAAAGGTAAACCTTTACGGAATTAG 2448
|||||||||||||.||.|||||.||||||||||||||.|||
RBAM_029920__ 2330 TGCAGCATATGCTCGTCAAAGGCAAACCTTTACGGAACTAG 2370
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