Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04853 and RBAM_029810

See Amino acid alignment / Visit BSNT_04853 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_04853___yusA.1.9828.seq
#    -bsequence dna-align/RBAM_029810___yusA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04853___yusA-RBAM_029810___yusA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04853___yusA-RBAM_029810___yusA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04853___yusA
# 2: RBAM_029810___yusA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     676/826 (81.8%)
# Similarity:   676/826 (81.8%)
# Gaps:          11/826 ( 1.3%)
# Score: 2771.0
# 
#
#=======================================

BSNT_04853___      1 TTGAAAAAGCTATTTTTGGGTGCATTACTGCTTGTATTTGCAGGAGTCAT     50
                     |||||||||.|..|.||..||||..|.||||||||.||.||.|||||..|
RBAM_029810__      1 TTGAAAAAGATTGTATTAAGTGCGCTGCTGCTTGTGTTCGCGGGAGTTTT     50

BSNT_04853___     51 GGCTGCCTGCGGTTCGAATAACGGCGCTGAATCCGGCAAGAAAGAAATTG    100
                     |||.||||||||.||   .||||||.| .|||     ||.||.|||||.|
RBAM_029810__     51 GGCCGCCTGCGGATC---AAACGGCTC-AAAT-----AAAAAGGAAATCG     91

BSNT_04853___    101 TCGTTGCGGCAACAAAAACACCGCATGCGGAAATTTTAAAAGAAGCTGAA    150
                     ||||.||.||.||.||||||||||||||.|||||.|||||||||||.|||
RBAM_029810__     92 TCGTCGCCGCGACCAAAACACCGCATGCTGAAATCTTAAAAGAAGCGGAA    141

BSNT_04853___    151 CCATTGCTGAAAGAAAAAGGCTATACGCTGAAAGTGAAAGTGCTTAGTGA    200
                     ||..|..||||.|||||||||||.||..|.|||||.||||||||.|..||
RBAM_029810__    142 CCGCTCTTGAAGGAAAAAGGCTACACATTAAAAGTAAAAGTGCTGAACGA    191

BSNT_04853___    201 TTACAAAATGTACAATAAAGCTTTAGCTGATAAAGAAGTGGACGCGAACT    250
                     |||||||||||||||.|||||.|||||||||||.||||||||.|||||||
RBAM_029810__    192 TTACAAAATGTACAACAAAGCGTTAGCTGATAATGAAGTGGATGCGAACT    241

BSNT_04853___    251 ACTTCCAGCACATTCCTTACCTTGAGCAAGAAATGAAAGAAAACACAGAT    300
                     |||||||||||.|||||||||||||.||.||||||||||||||.|.||||
RBAM_029810__    242 ACTTCCAGCACGTTCCTTACCTTGAACAGGAAATGAAAGAAAATAAAGAT    291

BSNT_04853___    301 TACAAACTTGTGAATGCCGGCGCTGTTCACTTAGAGCCATTCGGTATTTA    350
                     ||||||||.|||||||||||.||.||||||.|.|||||||||||.|||||
RBAM_029810__    292 TACAAACTCGTGAATGCCGGAGCCGTTCACCTTGAGCCATTCGGAATTTA    341

BSNT_04853___    351 CTCTAAAACATACAAATCACTGAAAGACCTTCCAGACGGTGCGACAATCA    400
                     |.|.||||.|||||||||||||||||||||.||..|.||.|||||.||||
RBAM_029810__    342 CACGAAAAAATACAAATCACTGAAAGACCTGCCTAAAGGCGCGACCATCA    391

BSNT_04853___    401 TTCTGACAAACAACGTTGCTGAACAAGGCCGTATGCTTGCAATGCTTGAA    450
                     |..||||.|||||.||.||||||||||||||||||||.||.|||||||||
RBAM_029810__    392 TCATGACTAACAATGTCGCTGAACAAGGCCGTATGCTGGCGATGCTTGAA    441

BSNT_04853___    451 AACGCTGGATTAATTACTCTTGACTCTAAAGTTGAAACAGTTGACGCAAC    500
                     ||.||.|||.|.||.||.|||||..|.||.||..||||..||||.||.||
RBAM_029810__    442 AAAGCCGGACTGATCACACTTGATCCGAAGGTAAAAACGATTGAAGCCAC    491

BSNT_04853___    501 ATTGAAAGACATTAAGAAAAACCCGAAAAACCTTGA-ATTCAAAAAAGTA    549
                     ...||||.||||||.||||||||||||||||| ||| ||||||||||.|.
RBAM_029810__    492 TACGAAAAACATTACGAAAAACCCGAAAAACC-TGACATTCAAAAAAATC    540

BSNT_04853___    550 GCGCCTGAATTAACGGCAAAAGCATATGAAAACAAAGAAGGAGACGCGGT    599
                     ||.||||||||||||||.|||||||||.|..|..|||||||.||.||.||
RBAM_029810__    541 GCCCCTGAATTAACGGCGAAAGCATATAATGAAGAAGAAGGCGATGCAGT    590

BSNT_04853___    600 CTTCATCAATGTAAACTATGCGATCCAAAATAAATTAAATCCTAAAAAAG    649
                     ||||||.||.||.|||||||||||.|||||.|||.|.|||||...|||||
RBAM_029810__    591 CTTCATTAACGTCAACTATGCGATTCAAAACAAACTGAATCCGTTAAAAG    640

BSNT_04853___    650 ATGCAATTGAAGTAGAATCAACGAAAAACAACCCATACGCTAACATCATC    699
                     ||||.|||.||||.||||||||||||||||||||.|||||.|||||||||
RBAM_029810__    641 ATGCGATTCAAGTGGAATCAACGAAAAACAACCCGTACGCAAACATCATC    690

BSNT_04853___    700 GCAGTAAGAAAAGGCGAAGAAGATTCTGCAAAAATCAAAGCGCTGATGGA    749
                     ||.|||.|.|||||.||.|||.|.||.|..||||||||||||||.|||||
RBAM_029810__    691 GCCGTACGCAAAGGTGACGAAAAATCAGAGAAAATCAAAGCGCTTATGGA    740

BSNT_04853___    750 AGTTCTTCACTCTAAAAAGATCAAAGACTTCATCGAGAAAAAATACGACG    799
                     |||.|||||||||||.||.|||||||||||.||.||||||||||||||||
RBAM_029810__    741 AGTGCTTCACTCTAAGAAAATCAAAGACTTTATTGAGAAAAAATACGACG    790

BSNT_04853___    800 GAGCTGTGCTTCCTGTATCTGAATAA    825
                     ||||.||||||||.||||||||||||
RBAM_029810__    791 GAGCCGTGCTTCCCGTATCTGAATAA    816


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