Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04845 and RBAM_029790

See Amino acid alignment / Visit BSNT_04845 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_04845___yurY.1.9828.seq
#    -bsequence dna-align/RBAM_029790___yurY.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04845___yurY-RBAM_029790___yurY.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04845___yurY-RBAM_029790___yurY.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04845___yurY
# 2: RBAM_029790___yurY
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 789
# Identity:     708/789 (89.7%)
# Similarity:   708/789 (89.7%)
# Gaps:           6/789 ( 0.8%)
# Score: 3199.0
# 
#
#=======================================

BSNT_04845___      1 ATGGCTGCTTCAACATTAACGATCAAAGATCTTCACGTTGAAATCGAAGG     50
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_029790__      1 ATGGCTGCTTCAACATTAACGATCAAGGATCTTCACGTTGAAATCGAAGG     50

BSNT_04845___     51 GAAAGAGATCTTAAAGGGTGTAAACCTTGAAATAAAAGGTGGAGAATTCC    100
                     .||||||||||||||.|||||||||||||||||||||||.||.|||||||
RBAM_029790__     51 AAAAGAGATCTTAAAAGGTGTAAACCTTGAAATAAAAGGCGGCGAATTCC    100

BSNT_04845___    101 ACGCAGTAATGGGCCCGAACGGAACTGGTAAATCCACTTTATCAGCTGCT    150
                     ||||.||.|||||.||||||||.||.|||||||||||..|.|||||.||.
RBAM_029790__    101 ACGCTGTCATGGGGCCGAACGGTACGGGTAAATCCACGCTTTCAGCAGCG    150

BSNT_04845___    151 ATTATGGGGCATCCTAAATATGAAGTAACAAAAGGCAGCATCACGCTTGA    200
                     ||||||||.||.||.|||||.|||||.|||||||||||||||||||||||
RBAM_029790__    151 ATTATGGGACACCCGAAATACGAAGTTACAAAAGGCAGCATCACGCTTGA    200

BSNT_04845___    201 CGGCAAAGATGTACTGGAGATGGAAGTGGACGAGCGTGCGCAGGCAGG-C    249
                     ||||||.|||||||||||.|||||||||||||||||.||.|||||.|| |
RBAM_029790__    201 CGGCAAGGATGTACTGGAAATGGAAGTGGACGAGCGCGCTCAGGCGGGTC    250

BSNT_04845___    250 TTATTCCTTGCGATGCAGTACCCAAGTGAAATCAGCGGTGTGACAAATGC    299
                     || |||||.|||||||||||||||||.|||||||||||||||||||||||
RBAM_029790__    251 TT-TTCCTGGCGATGCAGTACCCAAGCGAAATCAGCGGTGTGACAAATGC    299

BSNT_04845___    300 CGACTTCCTTCGCTCAGCAATCAATGCGCGCAGAGAAGAAGGCGATGAAA    349
                     |||.|||||||||||.||.||.||.||.|||.|.||||||||||||||||
RBAM_029790__    300 CGATTTCCTTCGCTCTGCGATTAACGCACGCCGTGAAGAAGGCGATGAAA    349

BSNT_04845___    350 TTTCTCTTATGAAATTCATCCGCAAAATGGACGAAAACATGGAGTTCCTT    399
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_029790__    350 TTTCTCTTATGAAATTCATCCGCAAAATGGACGAAAACATGGAGTTCCTT    399

BSNT_04845___    400 GAAATGGACCCTGAAATGGCTCAGCGCTACCTTAACGAAGGATTCTCAGG    449
                     ||||||||||||||||||||.|||||.|||||.||||||||.||||||||
RBAM_029790__    400 GAAATGGACCCTGAAATGGCGCAGCGTTACCTGAACGAAGGTTTCTCAGG    449

BSNT_04845___    450 CGGGGAGAAAAAACGCAACGAAATCCTTCAATTAATGATGATTGAACCGA    499
                     ||||||||||||||||||||||||||||||..|.||||||||.||.||||
RBAM_029790__    450 CGGGGAGAAAAAACGCAACGAAATCCTTCAGCTTATGATGATCGAGCCGA    499

BSNT_04845___    500 AAATCGCCATCCTCGATGAAATCGACTCAGGTCTTGATATTGA--CGCTT    547
                     ||||||||||.||.||.||.|||||.||||||||||||||.||  |||||
RBAM_029790__    500 AAATCGCCATTCTTGACGAGATCGATTCAGGTCTTGATATCGATGCGCTT    549

BSNT_04845___    548 TGAAAGTTGTATCAAAAGGGATCAACAAAATGCGCAGCGAAAACTTCGGC    597
                       |||||.||.||.|||||.|||||||.||||||||||||||||||||||
RBAM_029790__    550 --AAAGTCGTTTCTAAAGGAATCAACAGAATGCGCAGCGAAAACTTCGGC    597

BSNT_04845___    598 TGCCTGATGATCACTCACTATCAGCGCCTGTTAAACTACATCACTCCGGA    647
                     |||.|.||||||||||||||.||||||||..|.|||||||||||.||.||
RBAM_029790__    598 TGCTTAATGATCACTCACTACCAGCGCCTTCTGAACTACATCACGCCTGA    647

BSNT_04845___    648 TGTTGTTCACGTTATGATGCAAGGCCGCGTTGTAAAATCCGGCGGTGCAG    697
                     |||.|||||||||||||||||.||.|||||.||.|||||||||||.||.|
RBAM_029790__    648 TGTCGTTCACGTTATGATGCAGGGACGCGTAGTGAAATCCGGCGGCGCGG    697

BSNT_04845___    698 AGCTTGCACAGCGTCTTGAAGCAGAAGGTTATGACTGGATCAAACAAGAA    747
                     |||||||||||||.||||||||.|||||||||||||||||.|||||||||
RBAM_029790__    698 AGCTTGCACAGCGCCTTGAAGCGGAAGGTTATGACTGGATTAAACAAGAA    747

BSNT_04845___    748 CTTGGCATTGAAGACGAAACTGTTGGCCAAGAAGCGTAA    786
                     ||.||||||||||||||||||||.|||||||||||||||
RBAM_029790__    748 CTAGGCATTGAAGACGAAACTGTAGGCCAAGAAGCGTAA    786


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