Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03901 and RBAM_029740

See Amino acid alignment / Visit BSNT_03901 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_03901___csn.1.9828.seq
#    -bsequence dna-align/RBAM_029740___csn.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03901___csn-RBAM_029740___csn.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03901___csn-RBAM_029740___csn.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03901___csn
# 2: RBAM_029740___csn
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 839
# Identity:     686/839 (81.8%)
# Similarity:   686/839 (81.8%)
# Gaps:          25/839 ( 3.0%)
# Score: 2848.5
# 
#
#=======================================

BSNT_03901___      1 ATGAAAATCAG---TATGCAAAAAGCA------------------GCGAT     29
                     |||||||||||   .|.|.||||||||                  |||.|
RBAM_029740__      1 ATGAAAATCAGCTTGAAGAAAAAAGCAGGTTTTTGGAAGAAGACGGCGGT     50

BSNT_03901___     30 CTCATTACTTGTTTTCACCATGTTTTTTACCCTGATGATGAGCGAAACGG     79
                     .||.|.||||.|||||||||||||||||||||||||||||||||..||||
RBAM_029740__     51 TTCGTCACTTATTTTCACCATGTTTTTTACCCTGATGATGAGCGGTACGG    100

BSNT_03901___     80 TTTTTGCGGCGGGACTGAATAAAGATCAAAAGCGCCGGGCGGAACAGCTG    129
                     ||||||||||.||.||||||||.|||||.|||||||||||||||||||||
RBAM_029740__    101 TTTTTGCGGCCGGGCTGAATAAGGATCAGAAGCGCCGGGCGGAACAGCTG    150

BSNT_03901___    130 ACAAGTATCTTTGAAAACGGCACAACGGAGATCCAATATGGATATGTAG-    178
                     ||.||.||||||||||||||.|..|||||.||||||||.||||||||.| 
RBAM_029740__    151 ACCAGCATCTTTGAAAACGGAAAGACGGAAATCCAATACGGATATGTTGA    200

BSNT_03901___    179 AGCGATTGGATGACGGGCGAGGCTATACATGCGGACGGGCAGGCTTTACA    228
                     |||| ||||||||.||..||||.||.||.|||||.|||||.||||||||.
RBAM_029740__    201 AGCG-TTGGATGATGGAAGAGGTTACACTTGCGGGCGGGCCGGCTTTACG    249

BSNT_03901___    229 ACGGCTACCGGGGATGCATTGGAAGTAGTGGAAGTATACACAAAGGCAGT    278
                     |||||||||||.|||||..||||||||||.|||||||||||.||.||.||
RBAM_029740__    250 ACGGCTACCGGAGATGCGCTGGAAGTAGTCGAAGTATACACGAAAGCGGT    299

BSNT_03901___    279 TCCGAATAACAAACTGAAAAAGTATCTGCCTGAATTGCGCCGTCTGGCCA    328
                     .||||||||||||.|||||||||||.|||||||||||||.|||||.||.|
RBAM_029740__    300 GCCGAATAACAAATTGAAAAAGTATTTGCCTGAATTGCGGCGTCTTGCGA    349

BSNT_03901___    329 AGGAAGAAAGCGATGATACAAGCAATCTCAAGGGATTCGCTTCTGCCTGG    378
                     ||||.|||||||||||.|..||||||.|.||.||||||||||||||||||
RBAM_029740__    350 AGGACGAAAGCGATGACATCAGCAATTTGAAAGGATTCGCTTCTGCCTGG    399

BSNT_03901___    379 AAGTCGCTTGCAAATGATAAGGAATTTCGCGCCGCCCAAGACAAAGTAAA    428
                     ...||.||||..||||||||.|..||.|||||.|||||.||.||.|||||
RBAM_029740__    400 CGCTCACTTGGCAATGATAAAGCCTTCCGCGCTGCCCAGGATAAGGTAAA    449

BSNT_03901___    429 TGACCATTTGTATTATCAGCCTGCCATGAAACGATCGGATAATGCCGGAC    478
                     ||||...||||||||||||||.||.|||.||||.||.||.||||||||||
RBAM_029740__    450 TGACAGCTTGTATTATCAGCCGGCGATGGAACGTTCAGAAAATGCCGGAC    499

BSNT_03901___    479 TAAAAACAGCATTGGCTAGAGCTGTGATGTACGATACGGTTATTCAGCAT    528
                     |.|||||.||.|||||.|.|||.|||||||||||||||||.|||||||||
RBAM_029740__    500 TGAAAACGGCCTTGGCAAAAGCAGTGATGTACGATACGGTGATTCAGCAT    549

BSNT_03901___    529 GGCGATGGTGATGACCCTGACTCTTTTTATGCCTTGATTAAACGTACGAA    578
                     |||||.||.|||||.||.|||||.|||||||||.||||||||||.|||||
RBAM_029740__    550 GGCGACGGCGATGATCCAGACTCCTTTTATGCCCTGATTAAACGCACGAA    599

BSNT_03901___    579 CAAAAAAGCGGGCGGATCACCTAAAGACGGAATAGACGAGAAGAAGTGGT    628
                     |||||||..||||||.|||||.||||||||||..|||||||||||.|||.
RBAM_029740__    600 CAAAAAAATGGGCGGGTCACCGAAAGACGGAACTGACGAGAAGAAATGGC    649

BSNT_03901___    629 TAAATAAATTCTTGGACGTACGCTATGACGATCTGATGAATCCGGCCAAT    678
                     |.||||||||||||||.||.||||||||||||||||||||||||.|..||
RBAM_029740__    650 TCAATAAATTCTTGGATGTGCGCTATGACGATCTGATGAATCCGTCAGAT    699

BSNT_03901___    679 CATGACACCCGTGACGAGTGGAGAGAATCAGTTGCCCGTGTGGACGTGCT    728
                     .|.|||||||..||.||.|||||||||||.|||||||||||.|||||..|
RBAM_029740__    700 GAGGACACCCAGGATGAATGGAGAGAATCGGTTGCCCGTGTCGACGTTTT    749

BSNT_03901___    729 TCGCTCTATCGCCAAGGAGAACAACTATAATCTAAACGGACCGATTCATG    778
                     .|||..|||.|.|||.|||||.|||||.|||.|||||||.||||||||||
RBAM_029740__    750 CCGCGATATTGTCAAAGAGAAGAACTACAATTTAAACGGGCCGATTCATG    799

BSNT_03901___    779 TTCGTTCAAACGAGTACGGTAATTTC-GTAATCAAATAA    816
                     |.||.||||.|||.|||||||||||| .||.|| |||||
RBAM_029740__    800 TCCGGTCAAGCGAATACGGTAATTTCACTATTC-AATAA    837


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