Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04835 and RBAM_029710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:22
# Commandline: needle
# -asequence dna-align/BSNT_04835___yurR.1.9828.seq
# -bsequence dna-align/RBAM_029710___yurR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04835___yurR-RBAM_029710___yurR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04835___yurR-RBAM_029710___yurR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04835___yurR
# 2: RBAM_029710___yurR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1157
# Identity: 804/1157 (69.5%)
# Similarity: 804/1157 (69.5%)
# Gaps: 79/1157 ( 6.8%)
# Score: 2599.5
#
#
#=======================================
BSNT_04835___ 1 ATGAAATCGTACATCATCGTCGGCGCAGGGATTCTGGGCGCGTCGACGGC 50
|||||.||.||..|.||..||||.||.||.|||||.||.|||||..||||
RBAM_029710__ 1 ATGAAGTCTTATTTGATTATCGGGGCCGGAATTCTCGGTGCGTCCGCGGC 50
BSNT_04835___ 51 TTATCATCTCGCAAAATCAGGCGCTCGCGTTACTGTCATTGATCGGAAAG 100
||||||.||||||||..|.||.||....||.||.||||||||.||||||.
RBAM_029710__ 51 TTATCACCTCGCAAAGGCCGGGGCGGAAGTAACAGTCATTGACCGGAAAC 100
BSNT_04835___ 101 AGCCGGGACAAGCGACTGATGCGGCGGCGGGGATCGTCTGTCCATGGCTC 150
|.|||||.||.||||||||.||.|||||||||||||||||.||.|||||.
RBAM_029710__ 101 ACCCGGGGCAGGCGACTGACGCCGCGGCGGGGATCGTCTGCCCGTGGCTG 150
BSNT_04835___ 151 TCGCAACGCCGTAATCAGGATTGGTACCAGCTTGCTAAGGGGGGAGCGCA 200
|||||.|||||.|||||||..|||||...|.||||.||.||.|||||.|.
RBAM_029710__ 151 TCGCAGCGCCGCAATCAGGCATGGTATGCGATTGCAAAAGGCGGAGCTCG 200
BSNT_04835___ 201 GTACTAT-AAGGATTTAATCCATCAATTGGAAAAAGACGGTGAATCGGAT 249
.||.||| ||.|| ||.||.||.||..|.|||...|||||.|||.|.||.
RBAM_029710__ 201 TTATTATGAACGA-TTGATACAGCAGCTTGAAGCTGACGGAGAAACAGAA 249
BSNT_04835___ 250 ACAGGATA-CAAACGTGTCGGTGCCATCAGCATTCATACTGACGCGTCTA 298
||.||.|| ||||.| |||||.|||.|||||.|.|||||.||.| |
RBAM_029710__ 250 ACCGGTTATCAAAAG-GTCGGAGCCGTCAGCCTCCATACGGATG-----A 293
BSNT_04835___ 299 AA-----CTCGATAAAATGGAGGAAAGGGCGTATAAGAGACGGGAGGATG 343
|| |||....|||||||||||||.||.|||||.|||.|.|||||.|
RBAM_029710__ 294 AAAAAAGCTCAGCCAAATGGAGGAAAGAGCTTATAAAAGAAGAGAGGACG 343
BSNT_04835___ 344 CGCCGGAAATCGGCGACATTACCCGCTTG--TCTGCAAGTGAAACGAAAA 391
|.||.||||||||.||||||||..|..|| ||.|.|| ||||||||..
RBAM_029710__ 344 CCCCTGAAATCGGTGACATTACAAGACTGACTCCGGAA--GAAACGAAGG 391
BSNT_04835___ 392 AGCTGTT-TCCGATTTTAGCTGACGGCTATGAAT------CGGTTCATAT 434
.|||||| .||| .||||.||| |.|||| ||||||||.|
RBAM_029710__ 392 CGCTGTTCCCCG-----CGCTGTCGG--AGGAATACGGGGCGGTTCATGT 434
BSNT_04835___ 435 CAGCGGTGCCGCCCGTGTGAACGGAAGAGCGCTGTGCCGGTCGCTTTTAA 484
||||||.||.|||||.||||||||.||.|||||..|...|.||||.||||
RBAM_029710__ 435 CAGCGGCGCGGCCCGGGTGAACGGGAGGGCGCTTCGTAAGGCGCTGTTAA 484
BSNT_04835___ 485 GCGCTGCAGAGAAACGCGGCGCAACGGTCATCAAAGGAAATGCGTCCTTG 534
.|||.||.|..||.|.||||||..||||...|||.|.|.|.|||||
RBAM_029710__ 485 ACGCGGCCGTTAAGCACGGCGCGGCGGTTTACAATGAAGAAGCGTC---- 530
BSNT_04835___ 535 CTTTTTGAAA----ACGGAACAGTCACCGGCGTGCAAACAGATGCAAAGC 580
..|.||||.| ||||..|.||||.|||.|||.||||.|..| ||.||
RBAM_029710__ 531 AATATTGACAGAGGACGGTGCCGTCATCGGTGTGAAAACCGCAG-AACGC 579
BSNT_04835___ 581 A-GTTTGCGGCTGACGCGGTCATTGTGACGGCGGGAGCATGGGCCAATGA 629
| |.||.|.||.|||..|||..|.||.|||||.||.||.||||| ||
RBAM_029710__ 580 ACGCTTACTGCCGACCAGGTTCTCGTAACGGCCGGCGCTTGGGC----GA 625
BSNT_04835___ 630 GATA-----TTGAAGCCTCTTGGCATTCATTTTCAAGTGTCATTTCAAAA 674
||.| ||| ||||.||.|||||.|.||||..|||.||||..|||||
RBAM_029710__ 626 GAGAGCTGCTTG-AGCCGCTCGGCATCCGTTTTTCAGTATCATACCAAAA 674
BSNT_04835___ 675 AGCGCAGATTATGCATTTTGAAATGACAGATGCAGATACAGGAT-----C 719
.||.|||||..|.||||| |.||.|.|||..|.||||| |
RBAM_029710__ 675 GGCACAGATCGTTCATTT-------AGAGCTTCAGGGAGAGGATACGGGC 717
BSNT_04835___ 720 G--TGGCCGGTTGTCATGCCGCCGAGTGATCAGTACATTCTTTCGTTTGA 767
| |||||.||.||||||||.||.|..|||||.||||||||..|.|||||
RBAM_029710__ 718 GGCTGGCCCGTCGTCATGCCTCCAAACGATCAATACATTCTCGCCTTTGA 767
BSNT_04835___ 768 TAACGGCAGAATTGTAGCCGGCGCCACACACGAAAACGATGCAGGCCTTG 817
.|.|||||||||..||||.|||||.||.||.|||||||||.|.|||
RBAM_029710__ 768 CAGCGGCAGAATCATAGCAGGCGCGACTCATGAAAACGATACCGGC---- 813
BSNT_04835___ 818 AT-GATCTTCGTGTGACAGCCGGAGGCCAGCACGAAGTATTAAGCAAAGC 866
|| |||.|.||.|||||.|||||.||.|..|.|||..|.||...||||||
RBAM_029710__ 814 ATGGATTTGCGGGTGACGGCCGGCGGTCTCCGCGAGATTTTTGCCAAAGC 863
BSNT_04835___ 867 GTTAGCCGTTGCACCGGGTCTTGCTGATGCGG--CTGCAGTTGAAACAAG 914
.|||.||||.||.|||||.|||.|.|| |.| |||.|.|.||.|||||
RBAM_029710__ 864 ATTAACCGTGGCGCCGGGGCTTTCAGA--CAGTACTGTAATAGAGACAAG 911
BSNT_04835___ 915 AGTGGGCTTCAGGCCGTTTACACCGGGTTTTCTGCCGGTCGTTGGGGCCG 964
|||.||.||||||||||||||.||.||||||||.||.|||.|.||....|
RBAM_029710__ 912 AGTCGGTTTCAGGCCGTTTACTCCCGGTTTTCTTCCCGTCATCGGCAAAG 961
BSNT_04835___ 965 TGCCGAATGTTCA-AGGCCTATATGCTGCAAACGGTTTGGGTGCTTCTGG 1013
|||||||| .||| .||.||....|.|||.|||||..||||.||.||.||
RBAM_029710__ 962 TGCCGAAT-ATCAGCGGACTCCTCGTTGCCAACGGACTGGGCGCCTCAGG 1010
BSNT_04835___ 1014 ACTGACGATGGGGCCGT-TCTTGGGTGCAGAGCTCGCAAAGCTAGTTCTC 1062
||||||||..||||||| || ||||.||.||.||.||.||.||.|..|||
RBAM_029710__ 1011 ACTGACGAGCGGGCCGTATC-TGGGGGCTGAACTGGCGAAACTCGCGCTC 1059
BSNT_04835___ 1063 GGAAAGCAGACAGAATTAGACCTTAGTCCTTATCATCCAGCCGGAGCACT 1112
|||.|||||||.|||.|.||..|.||.|.||||.||||.|||||.||.||
RBAM_029710__ 1060 GGACAGCAGACGGAAATTGATTTAAGCCTTTATGATCCGGCCGGGGCGCT 1109
BSNT_04835___ 1113 TGCATAA 1119
||.||||
RBAM_029710__ 1110 TGAATAA 1116
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