Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04830 and RBAM_029650

See Amino acid alignment / Visit BSNT_04830 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:22
# Commandline: needle
#    -asequence dna-align/BSNT_04830___yurN.1.9828.seq
#    -bsequence dna-align/RBAM_029650___yurN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04830___yurN-RBAM_029650___yurN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04830___yurN-RBAM_029650___yurN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04830___yurN
# 2: RBAM_029650___yurN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 897
# Identity:     693/897 (77.3%)
# Similarity:   693/897 (77.3%)
# Gaps:          24/897 ( 2.7%)
# Score: 2691.5
# 
#
#=======================================

BSNT_04830___      1 ------------TTGGTCAATCAGAATAAAA----TAATCCCCTATTTGT     34
                                 ||||    ||||...||||    |.||.||.|||.|||
RBAM_029650__      1 ATGAGGATTTCCTTGG----TCAGCCGAAAACGTTTCATTCCGTATCTGT     46

BSNT_04830___     35 TTTTGGTGCCCGCTCTCGTTTTTTTACTTTTCGTTTATATCCCGATTTTT     84
                     ||.|.|.||||||.||..|||||.|.||.||||||||.||.||||||.||
RBAM_029650__     47 TTCTCGCGCCCGCGCTGATTTTTCTGCTGTTCGTTTACATTCCGATTATT     96

BSNT_04830___     85 GAGAATGTATTCCTCAGCCTGTTTCAGTGGAGCTCATTTTCTCCGGAAAA    134
                     ||||||||.||..||||.||||||.|.||||||||||||...||.|||||
RBAM_029650__     97 GAGAATGTGTTTTTCAGTCTGTTTGAATGGAGCTCATTTCAACCCGAAAA    146

BSNT_04830___    135 AACGTTTATCGGCTTAAAAAACTATGTTGAATTATTTCATGATCC--TGT    182
                     .|||||||||||.||.|||||.|||.||||..|.|||||.|||||  |||
RBAM_029650__    147 GACGTTTATCGGTTTGAAAAATTATATTGACCTGTTTCACGATCCCGTGT    196

BSNT_04830___    183 CTTCTATCAGGCACTTACCAATAATGTGCTTTATGCAGTGATCTCAATTG    232
                     .||.|| || |||||...|||.||||||||.|||||.||.||.||..|..
RBAM_029650__    197 TTTTTA-CA-GCACTCCGCAACAATGTGCTGTATGCGGTCATATCGCTGA    244

BSNT_04830___    233 TATGCCAGGTATTTGGCGGTTTGATTTTGGCGGCGGTGCTTGAGGATAAG    282
                     |.||||||||....|||||.||.|||.|||||||.|||||.||.||.|..
RBAM_029650__    245 TTTGCCAGGTTGGCGGCGGCTTAATTCTGGCGGCCGTGCTGGAAGACAGA    294

BSNT_04830___    283 CTGGTCAGAAAATGGTCGCCGTTTTTTCGTACCGTTTTCTTTTTGCCGGT    332
                     .||||.||||||||||||||||||||.||.||.||.||.|||.|.|||||
RBAM_029650__    295 TTGGTAAGAAAATGGTCGCCGTTTTTCCGCACGGTCTTTTTTCTTCCGGT    344

BSNT_04830___    333 TGTCATCTCAATGACTGTGATCGCGCTTTTGTTTGATTTTATTTACAATC    382
                     .|||||.||.|||||.||.||.|||||.|||||||||||||||||.||.|
RBAM_029650__    345 CGTCATTTCCATGACCGTCATTGCGCTGTTGTTTGATTTTATTTATAACC    394

BSNT_04830___    383 CGGAGACAGGGCTGTTGAATCAGCTGCTTCAGGCCATCGGTCTTGATCAG    432
                     ||||.|..|||||.||||||||||||||..|.|||.||||.||||||.|.
RBAM_029650__    395 CGGAAATCGGGCTTTTGAATCAGCTGCTGGAAGCCGTCGGACTTGATGAA    444

BSNT_04830___    433 CTGACGAGGGCCTGGCTCGGGGATGACAGCACAGCTATGCTTTCTGTCAT    482
                     |||||..||||.|||||.||.|||||.|.|||.||||||||.||||||||
RBAM_029650__    445 CTGACCCGGGCGTGGCTGGGCGATGAAAACACCGCTATGCTGTCTGTCAT    494

BSNT_04830___    483 TTTTGTGTCCCAGTGGCAATCTGTCGGTTATATTGCGATGTTGTACATCG    532
                     .||||||||.||.|||||.|||||||||||.||.||.|||.||||.||.|
RBAM_029650__    495 CTTTGTGTCTCAATGGCAGTCTGTCGGTTACATCGCCATGCTGTATATTG    544

BSNT_04830___    533 TGTCGATTCAAAAAATACCGGATGAACTGTATGAAGCGGCCCGGCTTGAC    582
                     |.||||||||.|..||.||.|.||||.|.||||||.||||.|.|||.|||
RBAM_029650__    545 TCTCGATTCAGAGCATTCCCGCTGAATTATATGAATCGGCGCAGCTGGAC    594

BSNT_04830___    583 GGCGCGGGTAAAATTCAGCAGTTTTTTCATATTACTGTTCCCCAGACGAA    632
                     ||.||.||.|||||.||||||||||||||.|||||.||.||.||||||||
RBAM_029650__    595 GGAGCCGGAAAAATCCAGCAGTTTTTTCACATTACGGTGCCGCAGACGAA    644

BSNT_04830___    633 AGAGATGTCTTTTGTTGCGGTGGTCATGACGCTGACCGGGGCCTTTACGG    682
                     |||.|||||.||||||||.|||||.||||||||||||||.||.|||||.|
RBAM_029650__    645 AGAAATGTCGTTTGTTGCTGTGGTGATGACGCTGACCGGCGCATTTACCG    694

BSNT_04830___    683 TCTTTAATGAGCCGTACATTTTGACAGGCGGCGGGCCGGGAAACGCGTCA    732
                     |.||||||||.|||||.|||.||||.|||||.||||||||.||.||.|||
RBAM_029650__    695 TATTTAATGAACCGTATATTCTGACCGGCGGAGGGCCGGGCAATGCTTCA    744

BSNT_04830___    733 GAAGTCTTGAGCACGTTTTTATATAAAAGCGCCTTTACAGAGGATATGAT    782
                     |||||..|||||||.|||||.|||||.||.||.||||||.||||||||||
RBAM_029650__    745 GAAGTGCTGAGCACATTTTTGTATAAGAGTGCTTTTACAAAGGATATGAT    794

BSNT_04830___    783 GGGCTACGCCTCAGCGATTGCCACTGTCGTGTTAATCATTACGCTTGCAT    832
                     |||||||||.||.|||||.||.||.||.|||.|..|..|.||||||||..
RBAM_029650__    795 GGGCTACGCTTCTGCGATCGCGACGGTGGTGCTTTTGCTGACGCTTGCTC    844

BSNT_04830___    833 TATCGCTCATGCAAATGAAGTTCTTTAAAACCGGAAAGGAGGAGTAA    879
                     |.|||||.||.||.|||||.||||||||.|||||||||||||||||.
RBAM_029650__    845 TGTCGCTTATTCAGATGAAATTCTTTAAGACCGGAAAGGAGGAGTAG    891


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04830 and RBAM_029650

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
