Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04817 and RBAM_029580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:21
# Commandline: needle
# -asequence dna-align/BSNT_04817___yurG.1.9828.seq
# -bsequence dna-align/RBAM_029580___pucG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04817___yurG-RBAM_029580___pucG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04817___yurG-RBAM_029580___pucG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04817___yurG
# 2: RBAM_029580___pucG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1287
# Identity: 946/1287 (73.5%)
# Similarity: 946/1287 (73.5%)
# Gaps: 69/1287 ( 5.4%)
# Score: 3374.0
#
#
#=======================================
BSNT_04817___ 1 GTGTCAGGCAGAAGAGAATTATGCACCCCGTTAAGAACGATTATGACGCC 50
.||.|...|||||.||||||.||||..|||..||||||.||||||||.||
RBAM_029580__ 1 ATGCCGACCAGAAAAGAATTGTGCATTCCGCAAAGAACCATTATGACACC 50
BSNT_04817___ 51 AGGGCCTGTTGAGGTTGATCCGCGTGTATTAAGAGTAATGAGCACCCCGG 100
.||.||....||.|.|||.|||.|.||..|.||.|..|||.||.|.|||.
RBAM_029580__ 51 GGGACCGACAGAAGCTGAACCGAGAGTGCTGAGGGCGATGGGCGCTCCGA 100
BSNT_04817___ 101 TTGTCGGCCAATTTGATCCGGCGTTTACAGGTATTATGAATGAAACGATG 150
|..|||||||.|||||.|||||.|||||.||.||.|||||.|||||||||
RBAM_029580__ 101 TCATCGGCCAGTTTGACCCGGCATTTACCGGCATCATGAACGAAACGATG 150
BSNT_04817___ 151 GAGATGCTTCGGGAGCTGTTCCAAACAAAAAACCGCTGGGCATACCCGAT 200
.|.|||||.||.||..||||.|||||..|||||||||||||.||.||.||
RBAM_029580__ 151 CAAATGCTCCGTGAATTGTTTCAAACGGAAAACCGCTGGGCCTATCCTAT 200
BSNT_04817___ 201 TGACGGCACTTCACGGGCGGGAATTGAAGCAGTGCTGGCTAGTGTGATAG 250
||||||.||.|||.|.|||||.|||||.||.||.||.||.||||||||||
RBAM_029580__ 201 TGACGGTACATCAAGAGCGGGGATTGAGGCTGTTCTCGCAAGTGTGATAG 250
BSNT_04817___ 251 AGCCGGAAGATGATGTGCTCATTCCCATTTACGGCCGTTTCGGTTATTTG 300
|.||||..||....||||||.||||.||.|||||.||.|||||.||..||
RBAM_029580__ 251 AACCGGGCGACAGCGTGCTCGTTCCGATATACGGACGCTTCGGATACCTG 300
BSNT_04817___ 301 CTGACTGAAATCGCCGAGCGATATGGGGCAAATGTTCATATGCTTGAGTG 350
||||||||||||||||||||.||.||.||..|.|||||||.|.|.|||||
RBAM_029580__ 301 CTGACTGAAATCGCCGAGCGGTACGGAGCGGACGTTCATACGATCGAGTG 350
BSNT_04817___ 351 CGAATGGGGAACGGTTTTTGACCCG----GAGGACATCATACGGGAGATA 396
.||||||||||||||.|| ||| ||.||.||.||..|.|||||.
RBAM_029580__ 351 TGAATGGGGAACGGTCTT----CCGGCCTGACGAGATTATCAGCGAGATG 396
BSNT_04817___ 397 AAAAAAGTGAAGCCGAAAATTGTGGCAATGGTGCATGGAGAAACATCGAC 446
|||||..|....||||||||.||.||.||||||||.|||||||||||.||
RBAM_029580__ 397 AAAAAGATTTCCCCGAAAATCGTCGCTATGGTGCACGGAGAAACATCAAC 446
BSNT_04817___ 447 AGGACGGATTCACCCGCTGAAAGCCATCGGCGAAGCCTGCCGCACCGAGG 496
.||.|||||||||||||||||||..|||||.|||||.||||||.||.|.|
RBAM_029580__ 447 GGGGCGGATTCACCCGCTGAAAGAAATCGGGGAAGCGTGCCGCGCCCAAG 496
BSNT_04817___ 497 ATGCATTGTTTATCGTCGATGCAGTCGCAACGATTGGGGGCTGCGAGGTT 546
|.|||.|.||||||||.|||||.||.||.|||||.||.|||||||..||.
RBAM_029580__ 497 ACGCACTCTTTATCGTGGATGCCGTGGCCACGATCGGAGGCTGCGCCGTA 546
BSNT_04817___ 547 AAAGTCGATGAATGGAAGATTGACGCTGCCATCGGCGGAACGCAAAAGTG 596
|||...||||||||||||||||||||.|.||||||.|||||||||||.||
RBAM_029580__ 547 AAAACGGATGAATGGAAGATTGACGCAGTCATCGGGGGAACGCAAAAATG 596
BSNT_04817___ 597 TTTGTCTGTGCCCTCAGGAATGGCGCCGATTACATATAATGAGCGGGTGG 646
..|.||.||.|||||.||||||||.||||||||.||||||||.|||..||
RBAM_029580__ 597 CCTATCGGTCCCCTCCGGAATGGCTCCGATTACTTATAATGACCGGACGG 646
BSNT_04817___ 647 CGGACGTGATTGCAGCTCGCAAAAAGGTAGAACGCGGGATTGCGACACAA 696
|.|..||.|||||.||.||.||||||||||||||.||.||||||||...|
RBAM_029580__ 647 CAGCTGTCATTGCCGCGCGTAAAAAGGTAGAACGGGGCATTGCGACGGCA 696
BSNT_04817___ 697 GCTGACAGTGAAGCGCTTTCGGGAAATCGGCCGATCACAAGCAACTACTT 746
||||||.|..||..|||.||.||..||||||||||.||.||||||||.||
RBAM_029580__ 697 GCTGACGGCAAAATGCTGTCCGGTCATCGGCCGATTACGAGCAACTATTT 746
BSNT_04817___ 747 TGATTTGAGCCAGCTTGAGGATTATTGGAGCGAAAGACGGCTCAATCATC 796
||||.||||||||||.||||||||||||||.||||||.||||.|||||.|
RBAM_029580__ 747 TGATCTGAGCCAGCTCGAGGATTATTGGAGTGAAAGAAGGCTAAATCACC 796
BSNT_04817___ 797 ATACAGAAGCGACGACGATGCTGTACGCCTTACGTGAGGGAGTCAGACTG 846
|||||||||||||..|.|||||.||.||..|.||.|||||.||..|.||.
RBAM_029580__ 797 ATACAGAAGCGACAGCAATGCTTTATGCGCTGCGGGAGGGTGTGCGTCTT 846
BSNT_04817___ 847 GTGCTTGAAGAAGGTCTTGAGGCGCGTTTCGAGC-GGCATCGGCACCATG 895
||.||.||||||||.|||||.|..||.||| .|| |||||||||..||||
RBAM_029580__ 847 GTCCTGGAAGAAGGACTTGAAGAACGGTTC-CGCAGGCATCGGCGTCATG 895
BSNT_04817___ 896 ---AAGCCGCATTA--GCAGCAGGGA--TAAAGGCAATGGGGCTAAGATT 938
||| ||| ||| || |||| |..| ||.|||||.|| .||||
RBAM_029580__ 896 AAAAAG-CGC-TTATGGC----GGGACTTGCA-GCGATGGGCCT-TGATT 937
BSNT_04817___ 939 GTTT---------GGAGATGACAGCTGCAAAATGCCTGTTGTCACCTGTG 979
..|| ||||..|| ||| |||||||.|||||.||.|
RBAM_029580__ 938 TATTCGGCGATCCGGAGGCGA-AGC-------TGCCTGTCGTCACATGCG 979
BSNT_04817___ 980 TCGAA-ATTC--CCGGCGGCATTGACGGCGATTCTGTCCGTGACATGCTG 1026
| ||| |||| ||||..||| ||||||||.||..||.|....|||||.
RBAM_029580__ 980 T-GAAGATTCCGCCGGAAGCA--GACGGCGAATCGATCAGAAGGATGCTT 1026
BSNT_04817___ 1027 CTGGCACAATTCGGTATTGAAATCGCCAGCTCATTCGGCCCGCTCGCA-G 1075
.||.|.||||||||.|||||||||||||||||||||||.||||| ||| |
RBAM_029580__ 1027 TTGTCTCAATTCGGAATTGAAATCGCCAGCTCATTCGGTCCGCT-GCAGG 1075
BSNT_04817___ 1076 GGAAGATCTGGAGAATCGGCACGATGGGGTACAGCTGCAGAAAAGAAAAC 1125
||||.||.|||||||||||.||||||||.||||||||||||||.|||||.
RBAM_029580__ 1076 GGAAAATTTGGAGAATCGGAACGATGGGCTACAGCTGCAGAAAGGAAAAT 1125
BSNT_04817___ 1126 GTGCTATTCGTGCTTGCCGGGTTAGAGGCTGTGCTTCTCAGACA---TAA 1172
|||||.||.|||||.|||||..|.||.||.||.||..||||||| |..
RBAM_029580__ 1126 GTGCTGTTTGTGCTGGCCGGACTTGAAGCGGTTCTGATCAGACACGGTGT 1175
BSNT_04817___ 1173 CGCAGGAATCGAAGCAGGAAAAGCGCTCCAAGCAGCGCTGAATGTGTATG 1222
.||.| |..||||.||..|||||||.||.||.||.||.||..|.||||
RBAM_029580__ 1176 TGCCG---TTAAAGCCGGGGAAGCGCTGCAGGCGGCCCTTAACATATATG 1222
BSNT_04817___ 1223 AAAACGCTGGCCGCCAGGCAGCGGTGTAA-------- 1251
| .|| ||||.|.|..|.||||||..
RBAM_029580__ 1223 A----TCT-GCCGGCTGAAACCGGTGTGCTGTCATGA 1254
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