Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04796 and RBAM_029500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:20
# Commandline: needle
# -asequence dna-align/BSNT_04796___pucH.1.9828.seq
# -bsequence dna-align/RBAM_029500___pucH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04796___pucH-RBAM_029500___pucH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04796___pucH-RBAM_029500___pucH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04796___pucH
# 2: RBAM_029500___pucH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1439
# Identity: 942/1439 (65.5%)
# Similarity: 942/1439 (65.5%)
# Gaps: 172/1439 (12.0%)
# Score: 2875.0
#
#
#=======================================
BSNT_04796___ 1 ATGGCTTACGA--TA--TGGTGATAAAAGGTGCGAAGGCAGTTACGCCAG 46
|||||.||.|| || || ||||.||||||||.||.|| ||.|.
RBAM_029500__ 1 ATGGCCTATGACGTAATTG----TAAAGGGTGCGAAAGCTGT---GCGAA 43
BSNT_04796___ 47 ATGGCGTTATAGA---AGCTGAGATTGCAGTTCAA-AACGGTGTCATTGC 92
|.||||..|.||| .|||||.||.||.| |||| .||||....||.||
RBAM_029500__ 44 AAGGCGGAACAGAGCGGGCTGATATCGCCG-TCAAGGACGGGAAAATCGC 92
BSNT_04796___ 93 CGAGATAGGTTCTGACATTGAAGCAA--GCGGGACGGAAATCATCCAGGC 140
|..|||.||..|.|.||||||.|.|| ||||.|| ||.|..|.|||||
RBAM_029500__ 93 CTTGATCGGGCCCGGCATTGACGAAAACGCGGAAC--AAGTGGTGCAGGC 140
BSNT_04796___ 141 AGACGGGAAATACGTGTTTCCTGGTGTGATAGACTGCCATGTTCATTTTA 190
.|||||.|..||.||||||||.||.|.|.|.||.||.||.||.|||||.|
RBAM_029500__ 141 GGACGGCATGTATGTGTTTCCGGGAGCGGTCGATTGTCACGTGCATTTCA 190
BSNT_04796___ 191 ATGAACCGGGCAGGGAGGATTGGGAGGGGTTTGAAACAGGTTCTCAA--A 238
|||||||.|||.|.||.||.|||||.||..|||||||.|| ||||| |
RBAM_029500__ 191 ATGAACCCGGCCGCGAAGAATGGGAAGGCATTGAAACCGG--CTCAAACA 238
BSNT_04796___ 239 TGATGGCCGCAGGCGGTTGCACCACCTATTTTGATATGCCGCTCAACTGT 288
||.||||.||.|||||.||.||..|.|||||||||||||||||.|||||.
RBAM_029500__ 239 TGCTGGCTGCCGGCGGCTGTACGTCTTATTTTGATATGCCGCTTAACTGC 288
BSNT_04796___ 289 ATTCCATCAACCGTGACGGCAGAGCATCTTCTCGCAAAAGCTGAGCTAGG 338
||.||.||.||.||.||.||.||..|.||.||.|||||.||.||..|.|.
RBAM_029500__ 289 ATCCCTTCGACGGTAACTGCTGAAAACCTGCTGGCAAAGGCGGAAATCGC 338
BSNT_04796___ 339 CAGACAAAAATCTGCCGTGGATTTTGCGCTATGGGGCGGCCTTG-TGCCA 387
|..||..||.||.||.||.|||||||||||.|||||||| .||| ||||.
RBAM_029500__ 339 CGAACGGAAGTCAGCGGTTGATTTTGCGCTTTGGGGCGG-TTTGATGCCC 387
BSNT_04796___ 388 GGCCATATCGAGGACATCCGTCCGATGGCTGAAGCGGGAGCGATCGGGTT 437
||..|||.|||..|.|||||.||||||||.||||||||.||.||||||||
RBAM_029500__ 388 GGATATACCGAACATATCCGGCCGATGGCAGAAGCGGGGGCAATCGGGTT 437
BSNT_04796___ 438 TAAAGCGTTTTTATCAAAGTCAGGCACTGATGAGTTCCGCTCTGTTGATG 487
||||||||||.|.||.||.||.||.||.|||||.||.|..||.|..||||
RBAM_029500__ 438 TAAAGCGTTTCTGTCTAAATCGGGAACGGATGAATTTCAATCAGCCGATG 487
BSNT_04796___ 488 AACGGACATTGCTCAAAGGCATGGCAGAAATCGCGGC-TGCAGGAAAAAT 536
|||||||..|..|.||.||.|||...||||||||||| ||| ||.||..|
RBAM_029500__ 488 AACGGACTCTTTTAAAGGGAATGAAGGAAATCGCGGCGTGC-GGCAAGGT 536
BSNT_04796___ 537 CCTCGCTCTCCACGCGGAAAGCGATGCGATCAC-----------AAGC-- 573
..|.||.||.|||||.||||||||.||..|||| ||||
RBAM_029500__ 537 TTTGGCCCTGCACGCAGAAAGCGACGCCCTCACCCGATTCCTTGAAGCCG 586
BSNT_04796___ 574 --TACTTGCAGATGGTTTTGGCCAATAAAGGAAA---GGTGGACGCGGAT 618
|||..|| .|| ||.||||| |.||..|||
RBAM_029500__ 587 AGTACGCGC-----------TCC---AAGGGAAAATTGATGTCCGC---- 618
BSNT_04796___ 619 GCGTACGCCGCCTCCCGCCCGGAGGAAGCAGAAGTTGAAGCGGTGTATCG 668
||.|||||..|||||||.|||||.||.||.|||...||.||.|||.|.||
RBAM_029500__ 619 GCTTACGCTTCCTCCCGTCCGGAAGAGGCCGAATGCGAGGCTGTGCAGCG 668
BSNT_04796___ 669 CACGATTCAGTATGCGAAG-GTGACAGGCTGTCCGGTTCATTTTGTCCAT 717
..|||||.|.||||| ||| |.|||.||.||..||.||||||||||.|||
RBAM_029500__ 669 GGCGATTGAATATGC-AAGAGCGACGGGATGCGCGCTTCATTTTGTACAT 717
BSNT_04796___ 718 ATCAGCACGGCGAAAGCGGTCCG-GCT----GATCAGAGAGGCGAAACAG 762
||||||||| ||.|||.||| ||| ..|||| .||||||||.|.
RBAM_029500__ 718 ATCAGCACG----AAACGGGCCGTGCTCTCCATTCAG-CAGGCGAAAAAA 762
BSNT_04796___ 763 GAAGGTCTTGATGTTTCGGTCGAGACATGCCCGCATTATGTCTTGTTCAG 812
||.||..|.|||||..|.||.||.||.||.|||||.||..|.||.|||||
RBAM_029500__ 763 GACGGATTGGATGTCACCGTTGAAACGTGTCCGCACTACTTATTATTCAG 812
BSNT_04796___ 813 CCATGACGATTTACGGC---AAAGGGGCTCTGTCGCAAAATGCGCGCCTC 859
|..|||.||.|| |..| ||||||| |.|.|||.||||||||.||.|
RBAM_029500__ 813 CTTTGAAGACTT-CCTCAAAAAAGGGG--CGGCCGCCAAATGCGCTCCGC 859
BSNT_04796___ 860 CGCTCCGGTC----GCTGCAATCAAAAGAGACGCTGATCGAAACGCTCAT 905
|||||||.|| |||| || ||||||....|||||| .|.|..|
RBAM_029500__ 860 CGCTCCGCTCAGAGGCTG--AT--AAAGAGGAATTGATCG---GGGTTTT 902
BSNT_04796___ 906 TGCCGGGGAC---ATTGACATGGTTTCCTCAGACCATTCCCCCTGCCGTC 952
.||.|.||.| |||||.|||||.||.||.||.|||||.|||||.|.||
RBAM_029500__ 903 GGCAGAGGGCCTGATTGATATGGTGTCTTCGGATCATTCTCCCTGTCATC 952
BSNT_04796___ 953 CATCCTTGAAGCGGGAGGATAACATGTTTTTATCATGGGGCGGAATCAGC 1002
|.||.|||||.||.||||||||.|||||..|.||.||||||||.||||||
RBAM_029500__ 953 CGTCTTTGAAACGCGAGGATAATATGTTCCTGTCGTGGGGCGGGATCAGC 1002
BSNT_04796___ 1003 GGCGGGCAGTTCACTTTATTAGGAATGCTGGAACTGGCGCTTGAGCATCA 1052
||.||.||.||.||..|..|.||.|||.|..||.|.|||.|.||.|||..
RBAM_029500__ 1003 GGAGGCCAATTTACGCTTCTCGGCATGATTCAATTAGCGATCGATCATGG 1052
BSNT_04796___ 1053 GATTCCGTTTGAAACCAT------CGCAGAATGGACAGCGGCGGCCCCTG 1096
||||||||||||| ||| || ||||||.||.|..||.||||
RBAM_029500__ 1053 GATTCCGTTTGAA--CATGTGGCCCG----ATGGACGGCCGAAGCACCTG 1096
BSNT_04796___ 1097 CAAAACGATTCGGCCTTCA-GAAAAAAGGGCGGCTTGAGGCGGGGTGTGA 1145
|.||.||.||||| .||.| |||.|||||.||||||||.|..||.|.|||
RBAM_029500__ 1097 CCAAGCGCTTCGG-GTTAACGAATAAAGGCCGGCTTGAAGAAGGATTTGA 1145
BSNT_04796___ 1146 TGCAGATTTCGTGC--TCGTCAGCATGGAGCCGTACACTGTTACAAGAGA 1193
.||.||||| ||| |||||.|...|||.||.|..||.||.||||.|||
RBAM_029500__ 1146 CGCTGATTT--TGCCATCGTCCGGCCGGAACCTTTTACCGTCACAAAAGA 1193
BSNT_04796___ 1194 ATCGATGTTTGCAAAGCATAAAAAAAGCATTTACGAAGGACATACATTTC 1243
|.||||||||.|.||.|||||..|||||.|.||.|||||.||.||.||||
RBAM_029500__ 1194 AACGATGTTTTCCAAACATAAGCAAAGCCTGTATGAAGGCCACACCTTTC 1243
BSNT_04796___ 1244 CCTGCAGCATT--TGGACCACTTACAGCAAAGGCCGATGCGTGTACAATG 1291
|.|.|.|.||| || |.||.|||||.||.||.||.||.|||||..|.|
RBAM_029500__ 1244 CATACCGAATTGCTG--CAACCTACAGTAAGGGGCGCTGTGTGTATCAGG 1291
BSNT_04796___ 1292 ATGG-------------------------GGAA--------AAGGTCACT 1308
|||| |||| |||....||
RBAM_029500__ 1292 ATGGCGGCCGTAAGCAGAGCGGGGCTTTCGGAACATTCCTGAAGCCTTCT 1341
BSNT_04796___ 1309 GAAATTGACGGAG------CTCTGGTCGTTCCTTCGTAA 1341
|||| |.|..||| |||||.
RBAM_029500__ 1342 GAAA-TAAAAGAGCCGATTCTCTGA-------------- 1365
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