Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04787 and RBAM_029450

See Amino acid alignment / Visit BSNT_04787 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_04787___yunB.1.9828.seq
#    -bsequence dna-align/RBAM_029450___yunB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04787___yunB-RBAM_029450___yunB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04787___yunB-RBAM_029450___yunB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04787___yunB
# 2: RBAM_029450___yunB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 795
# Identity:     553/795 (69.6%)
# Similarity:   553/795 (69.6%)
# Gaps:         102/795 (12.8%)
# Score: 2078.5
# 
#
#=======================================

BSNT_04787___      1 ---------------------------------------TTGCCTTTCCG     11
                                                            ||||||||.||
RBAM_029450__      1 TTGCCTAGATACCGGAGCGCTCTTCGCAAGAGAGGGCCTTTGCCTTTTCG     50

BSNT_04787___     12 TTACGTGATGCTCCTGTCCGTTGTCTTTTTTATCCTGTCAACAACGG---     58
                     .||.|||.|.||.|||||..|||..|||||||||.|   |.|.||||   
RBAM_029450__     51 ATATGTGCTTCTTCTGTCGTTTGCTTTTTTTATCAT---ATCGACGGTCA     97

BSNT_04787___     59 TCAGCCTTTGGATGATCAATGGCTCGATCAAACCTGTTTTAATGGACATC    108
                     |||||||||||||||||||...|||.||||||||.||..|.|||.||||.
RBAM_029450__     98 TCAGCCTTTGGATGATCAACTCCTCAATCAAACCGGTGCTGATGAACATA    147

BSNT_04787___    109 GGCGAGATGGAAACGAAGCGTATAGCGACAGAGGTGATCCAGGATTCGAT    158
                     ||.||.||||||||.||.||..|.|||||||||||.||...|||.||.||
RBAM_029450__    148 GGAGAAATGGAAACCAAACGGGTGGCGACAGAGGTCATTACGGAATCCAT    197

BSNT_04787___    159 TGAGGACTATATGTCTGACAGTGAAAATATGAAAGATATGTTTCAAATGA    208
                     |||.||.||.||||||.||||.||.|||.|||||||||||.|..|.||||
RBAM_029450__    198 TGAAGAATACATGTCTCACAGCGACAATGTGAAAGATATGGTCGATATGA    247

BSNT_04787___    209 ATTCTGATGAAAACGGAAACTTAACGACAATCGATTTTAATACACAGGTT    258
                     |..|.||||||||||||||..|.||.||.||.||||||||||||||..|.
RBAM_029450__    248 AAACGGATGAAAACGGAAAAGTCACAACGATGGATTTTAATACACAAATG    297

BSNT_04787___    259 GTAAACAGTGTGAAAACAAAAGTGACAAAGCAGCTTCAGGCTCATTTGAA    308
                     ||.||||||.||||..|.|||||||||||||||||||||||||||.||||
RBAM_029450__    298 GTCAACAGTATGAAGGCGAAAGTGACAAAGCAGCTTCAGGCTCATCTGAA    347

BSNT_04787___    309 AGAGATGGA----AAC--------CCAT--ACCGGACACAGCGGCGCCAG    344
                     .||...|||    |||        .|||  |.||||.|.|  |||||   
RBAM_029450__    348 GGAAGCGGAGTTGAACAATAAGCAGCATGAAACGGAAAAA--GGCGC---    392

BSNT_04787___    345 TGAAAAC----------ATTATGATCAACATTCCGCTGGGACAGGTAACC    384
                      ||||||          |||||||||.|.|||||..|.||.|||||.||.
RBAM_029450__    393 -GAAAACGGCCGATGAAATTATGATCGATATTCCCTTAGGGCAGGTCACG    441

BSNT_04787___    385 GGCAACAGCCTTCTTGGAAACCTCGGGCCGAAAATCCCGGTCCGGTTCAA    434
                     ||.||||||.||||.|||||.||.||||||||||||||.||.||.||.||
RBAM_029450__    442 GGAAACAGCATTCTCGGAAATCTGGGGCCGAAAATCCCCGTGCGCTTTAA    491

BSNT_04787___    435 TTTAATCGGTGACGCTTTTACAGATGTCAAAACCAAAATCAAGCCGTATG    484
                     ..|.||||||||.||.||.||.|||||.|||||.|||||.||||||||.|
RBAM_029450__    492 CCTGATCGGTGATGCGTTAACTGATGTGAAAACAAAAATAAAGCCGTACG    541

BSNT_04787___    485 GCATAAATAACGCACTTATTGATATCAGCATCTTTGTCGAAATTAAAGTG    534
                     ||||.||.||.||.||.||.||||||||.||.|||||.|||||.||||||
RBAM_029450__    542 GCATTAACAATGCCCTGATCGATATCAGTATTTTTGTGGAAATAAAAGTG    591

BSNT_04787___    535 AAGGTCATCATTCCATTTGCCAGCAAAACCGCTGTCGTCACAAATAATGT    584
                     ||||||||.|||||.||||||||.||.||..|.|||||.|||||||||.|
RBAM_029450__    592 AAGGTCATTATTCCGTTTGCCAGTAAGACATCAGTCGTGACAAATAATAT    641

BSNT_04787___    585 TCCTGTATCGATTAAAGCAGTGCAGGGCGAAGTGCCGCAGTTTTATAATG    634
                     |||.||.||.||||||||..|.||.||.||.|||||||||||||||||.|
RBAM_029450__    642 TCCGGTCTCCATTAAAGCGATTCAAGGAGAGGTGCCGCAGTTTTATAACG    691

BSNT_04787___    635 GAAGCGGCGGCTCGGGTGTCACGCCTTCTGTCCAGCTCCCGAGCAGCAAA    684
                     ||||||||||.||.|||||.||||||||.||||||||.|||||       
RBAM_029450__    692 GAAGCGGCGGGTCAGGTGTGACGCCTTCCGTCCAGCTGCCGAG-------    734

BSNT_04787___    685 GAAGAAGACGGTGCTGATTCAAAAAAAGAAAAAAGCAGCAAATAA    729
                                       |.|||||.||||.||||  ..||||||
RBAM_029450__    735 ------------------TGAAAAACAGAAGAAAG--ATAAATAA    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04787 and RBAM_029450

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
