Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04784 and RBAM_029440

See Amino acid alignment / Visit BSNT_04784 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_04784___yunA.1.9828.seq
#    -bsequence dna-align/RBAM_029440___yunA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04784___yunA-RBAM_029440___yunA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04784___yunA-RBAM_029440___yunA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04784___yunA
# 2: RBAM_029440___yunA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 996
# Identity:     763/996 (76.6%)
# Similarity:   763/996 (76.6%)
# Gaps:          33/996 ( 3.3%)
# Score: 2894.0
# 
#
#=======================================

BSNT_04784___      1 GTGAAAGTTTTGTTATCCGCTCTTCTTCTCCTTTTGTTTGCATTTGAGCC     50
                     |||||||||.|||||||.||   ||||||||||||.|   ||.||     
RBAM_029440__      1 GTGAAAGTTCTGTTATCTGC---TCTTCTCCTTTTAT---CAGTT-----     39

BSNT_04784___     51 TTCTGT--GTCT------GGAAAAAAACTTTCAGATCCAGT----GCTGT     88
                     ||||||  |.||      ||.|||.|||..||.|.|||.||    |.|| 
RBAM_029440__     40 TTCTGTCCGGCTGCAAGCGGGAAAGAACAATCGGCTCCTGTTTACGGTG-     88

BSNT_04784___     89 CGAAACGGATGGAATTATATCATAAAATCGAAGCTGTGACGCAGATCCCT    138
                        ||||||||.|.||.||.|..|||..||||||.||.||||||||.|||
RBAM_029440__     89 ---AACGGATGCAGTTGTACCGCAAAGCCGAAGCAGTCACGCAGATTCCT    135

BSNT_04784___    139 TGGTATGCGCTCGCCGCTGTTGATCAATACGAAGAAAACGTGCGGAGCAA    188
                     |||||||.|||.||.||.|||||||||||.||||||||.||.||....||
RBAM_029440__    136 TGGTATGTGCTTGCGGCAGTTGATCAATATGAAGAAAATGTCCGCTCAAA    185

BSNT_04784___    189 CCGGAAAGATCTGCCTGAAAAGGCGGGAATCATCAGCATCTATATACCCG    238
                     |||.||.||||||||.|||||.|||||||||||||||||.|||||.||.|
RBAM_029440__    186 CCGAAAGGATCTGCCGGAAAAAGCGGGAATCATCAGCATTTATATTCCGG    235

BSNT_04784___    239 ATGATATCTGGAGCGGGCCTGAAAACCCGAATCCGAAAGACGATGCGCCG    288
                     ||.||.|.||||||||.||||||||.||.|||||.||.|||||||||||.
RBAM_029440__    236 ATCATTTGTGGAGCGGCCCTGAAAATCCAAATCCTAAGGACGATGCGCCT    285

BSNT_04784___    289 TTAAGCATTAAAGTGTTTGACGGAATCGGAATGGATGGCGATGGAGACGG    338
                     .|.|||||||||||.||||||||.|||||..||||.|||||.||.|||||
RBAM_029440__    286 CTCAGCATTAAAGTATTTGACGGGATCGGCCTGGACGGCGACGGCGACGG    335

BSNT_04784___    339 GAAAGCCGAGGTCAGCAACGATGAAGATATCTTGTATACGTTCAGC-CAA    387
                     .|||||||||||.|||||.|||||.||||||.|.|||||.|| .|| ||.
RBAM_029440__    336 AAAAGCCGAGGTAAGCAATGATGAGGATATCCTTTATACATT-TGCTCAG    384

BSNT_04784___    388 TACTTACTGTCGTAT--GGCACAGATGAAGACAACATCCGGATCGGGCTT    435
                     ||.|||  |..|.||  ||.||.|||...|||.|.|||||.|||||.||.
RBAM_029440__    385 TATTTA--GCGGGATTCGGAACCGATCTTGACCATATCCGCATCGGTCTC    432

BSNT_04784___    436 TGGAATTATTACCGGCGTGATCAGACAGTGGGGATTATATCTGAATTCAT    485
                     ||||||||||||||.||.||||||||.||.||.|||||..|.||||||||
RBAM_029440__    433 TGGAATTATTACCGCCGCGATCAGACGGTCGGCATTATCACCGAATTCAT    482

BSNT_04784___    486 GAAGCTGTTTAAAGCCTACGGCCATATTGATCTGGGCGAGCATGCATTCC    535
                     |||.|||||||||.|.|.|||||...|||||||.||.|||||.||.||.|
RBAM_029440__    483 GAAACTGTTTAAAACGTTCGGCCGCCTTGATCTCGGAGAGCACGCTTTTC    532

BSNT_04784___    536 CGCTTCCGATCAGAACCGATTACAGCTACCGAAGCACGTGGGGAGATGCC    585
                     |||||||..|.|..||.||||||||||||||.|||||.|||||.|..||.
RBAM_029440__    533 CGCTTCCCGTGAAGACGGATTACAGCTACCGCAGCACATGGGGCGCCGCA    582

BSNT_04784___    586 CGCGGCTTCGGTGGAAGGCGGATTCATGAAGGTACGGATATCTTTGCCCA    635
                     ||.||.|||||.||..|.||||||||.|||||.||||||.|.||.||.||
RBAM_029440__    583 CGGGGTTTCGGCGGGCGCCGGATTCACGAAGGAACGGATCTGTTCGCTCA    632

BSNT_04784___    636 TTACGGCCTTCCTGTCAAATCCACATGTTACGGCGTAGTTGAAATGAAGG    685
                     ||||||.||.||.||||.|||.||.||.|||||..|.|||||||||||||
RBAM_029440__    633 TTACGGGCTCCCCGTCAGATCGACCTGCTACGGTATTGTTGAAATGAAGG    682

BSNT_04784___    686 GCTGGAACCGCTTCGGAGGATGGAGAATCGGCATCAGGGACATTAACAAT    735
                     ||||||||||.|||||.||.||||||||||||||||||||.||.||.||.
RBAM_029440__    683 GCTGGAACCGTTTCGGCGGCTGGAGAATCGGCATCAGGGATATCAATAAC    732

BSNT_04784___    736 ACGTATCATTATTTTGCCCATCTCAATGGGTTTGCCAAAGGGATTAAAAC    785
                     ||||||||.||.||.||.||.||.||.||.|||||.|||||..|..|.|.
RBAM_029440__    733 ACGTATCACTACTTCGCTCACCTGAACGGCTTTGCAAAAGGTGTGCATAA    782

BSNT_04784___    786 AGGACAAATCGTTGAGCCTGGCCAAGTGATCGGATCAGTCGGCAGCTCCG    835
                     |||.||.|||||..|.||.||..|.||||||||.||.||||||||.||||
RBAM_029440__    783 AGGCCAGATCGTCAAACCCGGAGAGGTGATCGGCTCTGTCGGCAGTTCCG    832

BSNT_04784___    836 GATACGGCCCGCCGGGAACCGCCGGGAAGTTCCCGCCGCATCTGCACTAT    885
                     |.|||||.||||||||.|||||.||.||.||||||||||||||.|||||.
RBAM_029440__    833 GGTACGGACCGCCGGGCACCGCGGGAAAATTCCCGCCGCATCTTCACTAC    882

BSNT_04784___    886 GGCATGTACAAAGATAACGGAAGAACCGAATGGTCATTTGATCCATACCC    935
                     ||.|||||.|||||||||||.|||.|.||||||||.||||||||.||.||
RBAM_029440__    883 GGGATGTATAAAGATAACGGCAGATCGGAATGGTCTTTTGATCCGTATCC    932

BSNT_04784___    936 GCATTTGAGGGCGTGGGAGCGATATGAATACCAAAAAAAGAAGTAA    981
                     .|||||.|||||.|||||.|||.|.|||..||..|..||.||||||
RBAM_029440__    933 CCATTTAAGGGCATGGGAACGAAAAGAAATCCGCAGGAAAAAGTAA    978


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04784 and RBAM_029440

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
