Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04781 and RBAM_029420

See Amino acid alignment / Visit BSNT_04781 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_04781.1.9828.seq
#    -bsequence dna-align/RBAM_029420___yutD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04781-RBAM_029420___yutD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04781-RBAM_029420___yutD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04781
# 2: RBAM_029420___yutD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     243/309 (78.6%)
# Similarity:   243/309 (78.6%)
# Gaps:          33/309 (10.7%)
# Score: 1083.0
# 
#
#=======================================

BSNT_04781         1 ---------------------------------ATGATTCTTATTCAAAA     17
                                                      |||||||||||||||||
RBAM_029420__      1 ATGATAGTAAAGAGTGATAAAAGAGGTGAAGACATGATTCTTATTCAAAA     50

BSNT_04781        18 TGCTGAATTTGAATTGGTGCACAATTTCAAAGACGGCTTCAACGAAGAGG     67
                     |||.||.||||||.|.||.|||.||||.|||.|||||||.||.|||||.|
RBAM_029420__     51 TGCCGAGTTTGAACTCGTACACGATTTTAAAAACGGCTTTAATGAAGAAG    100

BSNT_04781        68 CTTTTAAAGCCCGCTACTCCGATATATTAAATAAATACGATTATATTGTG    117
                     |.||.|||||||||||.||.||.||||||||||||||.|||||.||||||
RBAM_029420__    101 CGTTCAAAGCCCGCTATTCGGACATATTAAATAAATATGATTACATTGTG    150

BSNT_04781       118 GGAGACTGGGGATACGGTCAGTTAAGGCTCAAGGGCTTCTTTGACGACCA    167
                     |||||||||||||||.|||||.|..|||||||.|||||||||||.|||||
RBAM_029420__    151 GGAGACTGGGGATACAGTCAGCTGCGGCTCAAAGGCTTCTTTGATGACCA    200

BSNT_04781       168 GAATCAAAAGGCAACCTTCGAAACGAAAATCAGCACATTAGATGAATATA    217
                     |||||||||.||||||||.||||||||||||||||||||.||.|||||.|
RBAM_029420__    201 GAATCAAAAAGCAACCTTTGAAACGAAAATCAGCACATTGGACGAATACA    250

BSNT_04781       218 TTTACGAATACTGCAATTTCGGCTGTGCGTATTTTGTCTTGAAACGGATC    267
                     |||||||||||||||||||||||||.|||||||||||.||.|||||.|||
RBAM_029420__    251 TTTACGAATACTGCAATTTCGGCTGCGCGTATTTTGTTTTAAAACGAATC    300

BSNT_04781       268 AGAAAATAA    276
                     |||||||||
RBAM_029420__    301 AGAAAATAA    309


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