Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04779 and RBAM_029400

See Amino acid alignment / Visit BSNT_04779 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:19
# Commandline: needle
#    -asequence dna-align/BSNT_04779___yutF.1.9828.seq
#    -bsequence dna-align/RBAM_029400___yutF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04779___yutF-RBAM_029400___yutF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04779___yutF-RBAM_029400___yutF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04779___yutF
# 2: RBAM_029400___yutF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 779
# Identity:     623/779 (80.0%)
# Similarity:   623/779 (80.0%)
# Gaps:          16/779 ( 2.1%)
# Score: 2521.5
# 
#
#=======================================

BSNT_04779___      1 ATGAAAACATATAAAGGGTATTTAATTGATTTAGACGGAACGATGTACAA     50
                     |||||....||||||||.|||||.||.|||||.|||||.||.||||||||
RBAM_029400__      1 ATGAAGGATTATAAAGGATATTTGATAGATTTGGACGGCACAATGTACAA     50

BSNT_04779___     51 TGGCACGGAAAAAATCGAGGAGGCGTGTGAATTTGTCAGAACGCTGAAAG    100
                     .||.||||||||||||||.||.|||||||||||.||.||||||||.||||
RBAM_029400__     51 CGGGACGGAAAAAATCGAAGAAGCGTGTGAATTCGTGAGAACGCTTAAAG    100

BSNT_04779___    101 ATCGCGGCGTTCCTTATCTTTTCGTGACAAACAACTCTTCGCGCACACCG    150
                     ..||||||.||||.|||.|.||||||||.|||||.|||||.||.||.|||
RBAM_029400__    101 CGCGCGGCATTCCGTATTTATTCGTGACGAACAATTCTTCCCGGACGCCG    150

BSNT_04779___    151 AAGCAGGTAGCGGACAAGCTCGTGTCTTTTGATATTCCGGCAACAGAAGA    200
                     ||||||||.|||||||||||..||...|||||.|||||||||.|.|||||
RBAM_029400__    151 AAGCAGGTGGCGGACAAGCTGATGAGCTTTGACATTCCGGCATCTGAAGA    200

BSNT_04779___    201 GCAGGTCTTCACGACCAGCATGGCAACTGCCCAGCACATTGCACAGCAGA    250
                     |||||||||||||||.||||||||.|||||.|||||.||.||.|||.|||
RBAM_029400__    201 GCAGGTCTTCACGACGAGCATGGCGACTGCGCAGCATATCGCCCAGGAGA    250

BSNT_04779___    251 AAAAAGACGCGTCTGTGTATGTGATTGGGGAGGAAGGAATCCGCCAGGCG    300
                     |||||||||||||.|||||||||||.||.||.|||||.|||||.|||||.
RBAM_029400__    251 AAAAAGACGCGTCGGTGTATGTGATCGGCGAAGAAGGCATCCGTCAGGCC    300

BSNT_04779___    301 ATTGAAGAAAACGGCCTGACATTTGGCGGAGAAAACGCGGACTTTGTCGT    350
                     ||||||||||||||.||||..||.||.|.|||||||||||||||||||||
RBAM_029400__    301 ATTGAAGAAAACGGGCTGAGCTTCGGAGAAGAAAACGCGGACTTTGTCGT    350

BSNT_04779___    351 TGTTGGCATCGACCGTTCCATTACATACGAAAAATTTGCTGTCGGCTGCC    400
                     |||.||.||||||||...|||||||||.|||||.||.||....||.||||
RBAM_029400__    351 TGTGGGAATCGACCGCGGCATTACATATGAAAAGTTGGCAACGGGATGCC    400

BSNT_04779___    401 TGGCAATCAGAAATGGCGCCCGCTTTATTTCCACTAACGGAGATATTGCG    450
                     |.||.||||||||.||||||||.||.|||||.||.|||||.||..||||.
RBAM_029400__    401 TTGCGATCAGAAACGGCGCCCGGTTCATTTCAACAAACGGCGACGTTGCC    450

BSNT_04779___    451 ATTCCGACTGAAAGAGGGCTTCTGCCGGGAAACGGCTCACTGACATCGGT    500
                     |||||||||||||||||||||.|.||.||.|||||.||.||.|||||.||
RBAM_029400__    451 ATTCCGACTGAAAGAGGGCTTTTACCAGGGAACGGTTCGCTCACATCCGT    500

BSNT_04779___    501 GTTAACCGTATCTACAGGTGTACAGCCTGTATTTATCGGCAAGCCGGAAT    550
                     .||.||.||.||.||.||.||..|||||||.||||||||||||||.||||
RBAM_029400__    501 TTTGACGGTGTCAACGGGCGTTGAGCCTGTCTTTATCGGCAAGCCTGAAT    550

BSNT_04779___    551 CAATTATTATGGAGCAGGCGATGCGCGTTCTCGGCACAGATGTGTCTGAA    600
                     |.|||||||||||.|||||||||||.||.|||||.||.|||.|.||.|||
RBAM_029400__    551 CCATTATTATGGAACAGGCGATGCGTGTGCTCGGAACGGATATTTCCGAA    600

BSNT_04779___    601 ACACTCATGGTCGGCGACAACTACGCCACTGATATTATGGCCGGCATTAA    650
                     |||||||||||||||||.|||||.||.||.|||||||||||||||||.||
RBAM_029400__    601 ACACTCATGGTCGGCGATAACTATGCAACGGATATTATGGCCGGCATCAA    650

BSNT_04779___    651 CGCGGGTATGGATACGCTGCTCGTTCACACAGGCGTAACGAAAAGAGAAC    700
                     .|||||.||||||||||||||.|||||.||.||.||.||.||..|.||.|
RBAM_029400__    651 TGCGGGCATGGATACGCTGCTGGTTCATACCGGAGTGACAAAGCGTGAGC    700

BSNT_04779___    701 ATATGACAGACGATATGG--AAAAACCGACTCACGCCATTGACTCTCTGA    748
                     |||||.||||  .||.||  |.||.|||||..|.||.|||||||||.|.|
RBAM_029400__    701 ATATGGCAGA--TTACGGCCAGAAGCCGACATATGCGATTGACTCTTTAA    748

BSNT_04779___    749 CTGAATGGAT------TCCATACATTTGA    771
                     |.||||||||      ||.|||.      
RBAM_029400__    749 CCGAATGGATTGAACATCTATAA------    771


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