Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04775 and RBAM_029380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:19
# Commandline: needle
# -asequence dna-align/BSNT_04775___yutH.1.9828.seq
# -bsequence dna-align/RBAM_029380___yutH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04775___yutH-RBAM_029380___yutH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04775___yutH-RBAM_029380___yutH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04775___yutH
# 2: RBAM_029380___yutH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1053
# Identity: 780/1053 (74.1%)
# Similarity: 780/1053 (74.1%)
# Gaps: 72/1053 ( 6.8%)
# Score: 2881.0
#
#
#=======================================
BSNT_04775___ 1 ATGGTGAAAGGTACAATAAAAGAAAAATACGGCATTCACATCAGGCAGCT 50
.|||||.|.|..||.|||||||||||||||||.|||.||||.|||||
RBAM_029380__ 1 ---ATGAAAAGCATCATTAAAGAAAAATACGGCATCCACGTCAGACAGCT 47
BSNT_04775___ 51 TTCCATGTACCAGCACACATATCAATGCTTTCAGACGCCTAATTCATACT 100
||||.|.||.||| |.|||.||||||||.||||||||||||||.|.||
RBAM_029380__ 48 TTCCGTTTATCAG---AAATACCAATGCTTCCAGACGCCTAATTCCTTCT 94
BSNT_04775___ 101 TTCTGATTGTCCCCGTTTCCCAATTCTCAGAAACAGAGCTGGCGGAGCTT 150
||||.||..|.|||||||||...||.||..||.||||||||.||||||||
RBAM_029380__ 95 TTCTTATAATTCCCGTTTCCGGGTTTTCGCAATCAGAGCTGACGGAGCTT 144
BSNT_04775___ 151 TATTACATGAGTCAGTATTTACAAGAACAAAGTGACCCATACGTTTCGGT 200
||.||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_029380__ 145 TACTACATGAGTCAGTATTTACAAGAACAAAGTGACCCATACGTTTCAGT 194
BSNT_04775___ 201 TTTTATCTTTACAAAAGAAGGTGAACTGACATTTGAACATGAGGGAAAAA 250
.|||||||||||.||.|||||.||||||||.|||||..|.||.||.||||
RBAM_029380__ 195 GTTTATCTTTACGAAGGAAGGAGAACTGACCTTTGAGGACGAAGGCAAAA 244
BSNT_04775___ 251 CGTA--CGCTCTGCTGAAGGCGGC----CCCCCCTTATTCAAACAGGGCG 294
|||| |||||| |.||.|||.| |||..| ||||||.||.||
RBAM_029380__ 245 CGTATGCGCTCT--TAAAAGCGCCGATTCCCGTC----TCAAACCGGTCG 288
BSNT_04775___ 295 TTCTCCATTGGAGCGGAGCTTGCGGAATTTCACCGAAAAGGCCGAGGATA 344
||.|||.|.||||.|||||||||.|||||||||.|||||||.||.||.|.
RBAM_029380__ 289 TTTTCCGTCGGAGGGGAGCTTGCCGAATTTCACAGAAAAGGGCGGGGTTT 338
BSNT_04775___ 345 TCCATATGAGGTGAAGGCAGCCGGAAGAATCGGCCAGTGGAAGGATCTGT 394
|||.||.||.|||||.|.|||.||.||.||||||||.||||||||..|.|
RBAM_029380__ 339 TCCGTACGAAGTGAAAGAAGCGGGCAGGATCGGCCAATGGAAGGACTTAT 388
BSNT_04775___ 395 GGGGAAAACGAATTGATCAGCTGGAAGCATTCTG---GCAGAGAAAGGTT 441
||||||||||..|.||||||||||||.||||||| |||||.|| ||
RBAM_029380__ 389 GGGGAAAACGGGTGGATCAGCTGGAATCATTCTGGATGCAGAAAA---TT 435
BSNT_04775___ 442 CAGACCCCTCCGCATGAGCCATTCGATAAAAAAATGATCGAATCATTTCC 491
||.|...||||||.|||.||.|||||.||.||||||||||||.|||||||
RBAM_029380__ 436 CATATGTCTCCGCTTGAACCGTTCGAAAAGAAAATGATCGAAGCATTTCC 485
BSNT_04775___ 492 ATATTATTTAGGACTGTCAGAAAACGCGATACAATATTTAGTGGACACTG 541
.|||||||.|||..|..|.||||||||.||.||||||||||||||.||.|
RBAM_029380__ 486 TTATTATTCAGGCTTAGCGGAAAACGCCATTCAATATTTAGTGGATACGG 535
BSNT_04775___ 542 AGCTGGATGACAAGCCCCAAGCCGCTGATTCAGGAACGATATGCCATCAG 591
|||||||||||||.|||...||.|..||.||.||.||.||.|||||||||
RBAM_029380__ 536 AGCTGGATGACAATCCCGGCGCAGAAGACTCGGGGACAATCTGCCATCAG 585
BSNT_04775___ 592 CGGATGGAAAGGCATACATGGTCACCGGAATCATTGATCAGGATTCCGGC 641
|||||||||.||.||||.|||||...|||||||||||||.|.|||||||.
RBAM_029380__ 586 CGGATGGAACGGGATACCTGGTCGGAGGAATCATTGATCCGCATTCCGGG 635
BSNT_04775___ 642 GGATTGGGTGTTTGACCACGCTTCCCGTGATTTGGCTGAATATATGAG-- 689
.||||||||.||.|||||.|||.||||||||.|.||.|||||||||.|
RBAM_029380__ 636 CGATTGGGTATTCGACCATGCTGCCCGTGATATTGCGGAATATATGCGCA 685
BSNT_04775___ 690 GCATACGTTTTTGCATC------ACAGAC-------AAGATTTTAATCAG 726
|| ||.|.||||.||| || ||| |||||
RBAM_029380__ 686 GC--ACATATTTGTATCATCGTGAC-GACCTGCTCAAAGAT--------- 723
BSNT_04775___ 727 CAGGGCTTTCTCTTTTTACAGGAATACGAGCAAGTCACACCGCTGTCTTC 776
||.|||.|.|||.|.||||||||.||||||.|.||.|||.|.||.||
RBAM_029380__ 724 ---GGGTTTTTGTTTCTGCAGGAATATGAGCAAATTACGCCGTTATCCTC 770
BSNT_04775___ 777 ATTTTCGAAACGCCTTTTATACAGCCGTCTGCTTTTCCCGCTTCATTATT 826
.|||||.||||||||.||.||||||||.|||||.||.|||||.||||..|
RBAM_029380__ 771 CTTTTCCAAACGCCTGTTTTACAGCCGCCTGCTGTTTCCGCTCCATTTCT 820
BSNT_04775___ 827 TTGAAATCGTAGAAAGCTATTACATGTCATCA-GAATCAGAAAAGCATTA 875
|.||.|..||.||.|||||||||||.|| ||| ||.||.||||||||.||
RBAM_029380__ 821 TCGAGACGGTGGAGAGCTATTACATTTC-TCATGATTCTGAAAAGCAGTA 869
BSNT_04775___ 876 TTTTGAAGAACAGCTTAACTTCATTCTTAATGACTGTGGGCGTTATGAAC 925
||..|||||.||||||.|||.|||||||...|||||....||.|||||||
RBAM_029380__ 870 TTACGAAGAGCAGCTTGACTACATTCTTGCCGACTGCACCCGCTATGAAC 919
BSNT_04775___ 926 AATTTCTCAATACAGCGCAGGAATTCATGAATATGCGGGCGCAGAAGCTG 975
|.|||.|..|.|||...||..|..|.||||||.|..||.||..|.||.|.
RBAM_029380__ 920 AGTTTTTACAGACATGTCACAACATGATGAATGTCAGGTCGGCGCAGGTT 969
BSNT_04775___ 976 TTTGTTCCAC-----GCGTCAGCTGGCTCGGCAAAGG---CAGCTCAGGG 1017
|||||.||.| ||| ||||||||.||||| |||.|| |
RBAM_029380__ 970 TTTGTCCCGCCTGTGGCG-----TGGCTCGGGAAAGGAATCAGTTC---G 1011
BSNT_04775___ 1018 TGA 1020
|.|
RBAM_029380__ 1012 TAA 1014
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