Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04767 and RBAM_029320

See Amino acid alignment / Visit BSNT_04767 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:18
# Commandline: needle
#    -asequence dna-align/BSNT_04767___yuzD.1.9828.seq
#    -bsequence dna-align/RBAM_029320___yuzD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04767___yuzD-RBAM_029320___yuzD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04767___yuzD-RBAM_029320___yuzD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04767___yuzD
# 2: RBAM_029320___yuzD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 341
# Identity:     232/341 (68.0%)
# Similarity:   232/341 (68.0%)
# Gaps:          31/341 ( 9.1%)
# Score: 790.0
# 
#
#=======================================

BSNT_04767___      1 ATG---AAACCAGTCATGCTAAGCGTATACGGGGCAGAAACCGTGTGTGC     47
                     |||   ||.||.||.|.|||.||.||.|||||.||.|||||..|.||.||
RBAM_029320__      1 ATGACAAAGCCGGTTACGCTCAGTGTTTACGGCGCTGAAACGCTTTGCGC     50

BSNT_04767___     48 GAGCTGTGTCAATATGCCGACAGCCAAGGATACATACGAGTGGCTTGAGG     97
                     .|||||.||.||||||||||..|||||.|||||.|..||.|||||.|.||
RBAM_029320__     51 AAGCTGCGTGAATATGCCGAGCGCCAAAGATACGTTTGAATGGCTGGGGG    100

BSNT_04767___     98 CTGCGCTGAAAAGAAAATATCCAAATCAGCCTTTTGAAATGCAGTACATC    147
                     |.||||||.||.|.||||||||..|.|||||||||.|.||||.|||.||.
RBAM_029320__    101 CGGCGCTGCAACGGAAATATCCGGAGCAGCCTTTTCACATGCGGTATATT    150

BSNT_04767___    148 GATATTTATGAGCCGCCT---GACAATGA-ACATGCGAAAGAGCTTGCGG    193
                     ||||||.|.|..||||||   .|.||.|| |||    .||||||||||||
RBAM_029320__    151 GATATTGACGCACCGCCTCAGCAAAAGGAGACA----GAAGAGCTTGCGG    196

BSNT_04767___    194 AAAAAATCAGAAATGACGAGTATTTTTATCCGCTTGTGCTCGTAGAAGAC    243
                     |....||||||||.||.||.|.|||.||||||||.|||||.||.||.||.
RBAM_029320__    197 AGCGCATCAGAAACGATGAATTTTTCTATCCGCTCGTGCTGGTGGAGGAT    246

BSNT_04767___    244 AAAATTGTCGGTGAAGGCAATCCAAAATTAAAAGACGTTTATGAGGAAAT    293
                     ...|||||.||.|||||.|||||..|.||||||||..|.|||||.|||||
RBAM_029320__    247 GTCATTGTGGGGGAAGGGAATCCGCATTTAAAAGATATATATGAAGAAAT    296

BSNT_04767___    294 GGAGAAGCATGGGTATACAGAAAACCGCTGA----------    324
                     |||.||||..||.|||          |.||.          
RBAM_029320__    297 GGAAAAGCGCGGCTAT----------GTTGCGGGCTCTTAA    327


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