Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05897 and RBAM_029260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:24
# Commandline: needle
# -asequence dna-align/BSNT_05897.1.9828.seq
# -bsequence dna-align/RBAM_029260___dltE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05897-RBAM_029260___dltE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05897-RBAM_029260___dltE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05897
# 2: RBAM_029260___dltE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 832
# Identity: 232/832 (27.9%)
# Similarity: 232/832 (27.9%)
# Gaps: 521/832 (62.6%)
# Score: 513.5
#
#
#=======================================
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 1 ATGAAACTGACGGGAAATACAATACTGATTACAGGCGGAAATGCCGGAAT 50
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 51 AGGATTGGCTTTCGCAGAACGGTTTTTAAAAGCGGGAAATAAAGTCATCG 100
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 101 TGACCGGACGGCGTGAGCACGCTCTTCAAAAAGCAAAGGAAACATTCCCG 150
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 151 GATCTTATTACATATGTCAGTGATTTGAGCATTCCATCTGAACGTATATC 200
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 201 ACTGTTTGAATGGGTGAAAGAAAATTATCCGGAAGTGAATGTGTTAGTAA 250
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 251 ACAACGCGGGGATTCAACAACGTTTTCATGTGCTGAAAGCGGATGCGAAG 300
BSNT_05897 0 -------------------------------------------------- 0
RBAM_029260__ 301 GACAATTGGGACTATTTCAATAAAGAAATCACAACGAACATTGAAGCTCC 350
BSNT_05897 1 -----------------------------------------ATGAAGCAG 9
|.|||
RBAM_029260__ 351 CTTCCACCTGTCTATGCTGTTCGCTCCGTTTTTTGCCGGAAAAGAA---- 396
BSNT_05897 10 CCTGAAGCGGCAATCGTTCAGGTCACATCCGGGCTT-GCGTTTAACCCGT 58
||.||||||.||.||.|.|||.| |.||||.|| ||.||||..|||.
RBAM_029260__ 397 ---GATGCGGCATTCATTAATGTCTC-TTCGGGATTGGCTTTTACACCGC 442
BSNT_05897 59 TAGCTGTTTATCCGGTGTACTGCGCAACAAAAGCGGCACTTCACTCGTTC 108
|.||..||...|||.|.||.|..|||||.||||||||.|||||.||.||.
RBAM_029260__ 443 TTGCCATTGCACCGATCTATTCAGCAACGAAAGCGGCGCTTCATTCATTT 492
BSNT_05897 109 TCGCTTACGCTCAGACACCAGCTCCGCGACACGAGC-GTGGAAGTGATTG 157
.|..|.|..||.|||||.|||||....||..| |.| ||.||||||||||
RBAM_029260__ 493 ACAATGAGTCTGAGACATCAGCTTTCTGATTC-ATCTGTAGAAGTGATTG 541
BSNT_05897 158 AAATGGTACCGCCT----------------AT---GGTGGA-CACGGGCT 187
|| ||..||||| || ||.||| || |||||
RBAM_029260__ 542 AA---GTTGCGCCTCCGGCGGTGAATACAGATTTAGGCGGAGCA-GGGCT 587
BSNT_05897 188 TAAACCAAAAATCACGCGATAAACAAGGCCTGACGTACCGGGGCATTTCA 237
|| |||..||||| .|.||||
RBAM_029260__ 588 ---------------GC-ATACTCAAGG-----AGAACCG---------- 606
BSNT_05897 238 TCT-GAAGAATATGTTCA----ATATTTCTTGGACGGCTTGAAGGAAGGC 282
|| ||.||||..|.|.| ||.|||...|||| ||||.||.|||
RBAM_029260__ 607 -CTGGATGAATTCGCTGATGGGATTTTTAAAGGAC----TGAAAGAGGGC 651
BSNT_05897 283 AAACAGGA-----GATTACTAATGAACGTGTT--------GAAGGTCTTC 319
|||||.|| ||| ||| ||| |||.|.||.|
RBAM_029260__ 652 AAACAAGAAATCGGAT-----ATG-----GTTCTTCAGAAGAACGGCTGC 691
BSNT_05897 320 GTGATGCCAC----TCGCGCCGAT--------------TATG-ACAGGTT 350
| .|||.||| |...|||||| |||| |||
RBAM_029260__ 692 G-CATGTCACGGGATAAAGCCGATGAACATACGGCAAATATGTACA---- 736
BSNT_05897 351 ATTCGAGCAAATG-AACACGCAGGAGAATTAA 381
||.|| ||| ||||..||...||||.|
RBAM_029260__ 737 ATGCG-----ATGAAACATACAATTGAATAA- 762
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