Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05897 and RBAM_029260

See Amino acid alignment / Visit BSNT_05897 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:24
# Commandline: needle
#    -asequence dna-align/BSNT_05897.1.9828.seq
#    -bsequence dna-align/RBAM_029260___dltE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05897-RBAM_029260___dltE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05897-RBAM_029260___dltE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05897
# 2: RBAM_029260___dltE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 832
# Identity:     232/832 (27.9%)
# Similarity:   232/832 (27.9%)
# Gaps:         521/832 (62.6%)
# Score: 513.5
# 
#
#=======================================

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__      1 ATGAAACTGACGGGAAATACAATACTGATTACAGGCGGAAATGCCGGAAT     50

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__     51 AGGATTGGCTTTCGCAGAACGGTTTTTAAAAGCGGGAAATAAAGTCATCG    100

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__    101 TGACCGGACGGCGTGAGCACGCTCTTCAAAAAGCAAAGGAAACATTCCCG    150

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__    151 GATCTTATTACATATGTCAGTGATTTGAGCATTCCATCTGAACGTATATC    200

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__    201 ACTGTTTGAATGGGTGAAAGAAAATTATCCGGAAGTGAATGTGTTAGTAA    250

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__    251 ACAACGCGGGGATTCAACAACGTTTTCATGTGCTGAAAGCGGATGCGAAG    300

BSNT_05897         0 --------------------------------------------------      0
                                                                       
RBAM_029260__    301 GACAATTGGGACTATTTCAATAAAGAAATCACAACGAACATTGAAGCTCC    350

BSNT_05897         1 -----------------------------------------ATGAAGCAG      9
                                                              |.|||    
RBAM_029260__    351 CTTCCACCTGTCTATGCTGTTCGCTCCGTTTTTTGCCGGAAAAGAA----    396

BSNT_05897        10 CCTGAAGCGGCAATCGTTCAGGTCACATCCGGGCTT-GCGTTTAACCCGT     58
                        ||.||||||.||.||.|.|||.| |.||||.|| ||.||||..|||.
RBAM_029260__    397 ---GATGCGGCATTCATTAATGTCTC-TTCGGGATTGGCTTTTACACCGC    442

BSNT_05897        59 TAGCTGTTTATCCGGTGTACTGCGCAACAAAAGCGGCACTTCACTCGTTC    108
                     |.||..||...|||.|.||.|..|||||.||||||||.|||||.||.||.
RBAM_029260__    443 TTGCCATTGCACCGATCTATTCAGCAACGAAAGCGGCGCTTCATTCATTT    492

BSNT_05897       109 TCGCTTACGCTCAGACACCAGCTCCGCGACACGAGC-GTGGAAGTGATTG    157
                     .|..|.|..||.|||||.|||||....||..| |.| ||.||||||||||
RBAM_029260__    493 ACAATGAGTCTGAGACATCAGCTTTCTGATTC-ATCTGTAGAAGTGATTG    541

BSNT_05897       158 AAATGGTACCGCCT----------------AT---GGTGGA-CACGGGCT    187
                     ||   ||..|||||                ||   ||.||| || |||||
RBAM_029260__    542 AA---GTTGCGCCTCCGGCGGTGAATACAGATTTAGGCGGAGCA-GGGCT    587

BSNT_05897       188 TAAACCAAAAATCACGCGATAAACAAGGCCTGACGTACCGGGGCATTTCA    237
                                    || |||..|||||     .|.||||          
RBAM_029260__    588 ---------------GC-ATACTCAAGG-----AGAACCG----------    606

BSNT_05897       238 TCT-GAAGAATATGTTCA----ATATTTCTTGGACGGCTTGAAGGAAGGC    282
                      || ||.||||..|.|.|    ||.|||...||||    ||||.||.|||
RBAM_029260__    607 -CTGGATGAATTCGCTGATGGGATTTTTAAAGGAC----TGAAAGAGGGC    651

BSNT_05897       283 AAACAGGA-----GATTACTAATGAACGTGTT--------GAAGGTCTTC    319
                     |||||.||     |||     |||     |||        |||.|.||.|
RBAM_029260__    652 AAACAAGAAATCGGAT-----ATG-----GTTCTTCAGAAGAACGGCTGC    691

BSNT_05897       320 GTGATGCCAC----TCGCGCCGAT--------------TATG-ACAGGTT    350
                     | .|||.|||    |...||||||              |||| |||    
RBAM_029260__    692 G-CATGTCACGGGATAAAGCCGATGAACATACGGCAAATATGTACA----    736

BSNT_05897       351 ATTCGAGCAAATG-AACACGCAGGAGAATTAA    381
                     ||.||     ||| ||||..||...||||.| 
RBAM_029260__    737 ATGCG-----ATGAAACATACAATTGAATAA-    762


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