Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01985 and RBAM_029250

See Amino acid alignment / Visit BSNT_01985 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_01985___yjcK.1.9828.seq
#    -bsequence dna-align/RBAM_029250___yjcK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01985___yjcK-RBAM_029250___yjcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01985___yjcK-RBAM_029250___yjcK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01985___yjcK
# 2: RBAM_029250___yjcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 575
# Identity:     373/575 (64.9%)
# Similarity:   373/575 (64.9%)
# Gaps:          64/575 (11.1%)
# Score: 1053.5
# 
#
#=======================================

BSNT_01985___      1 ATGTTAAAAGGAAAAACCATTTATGTTAG-------ACCTTTAGAAGTAA     43
                     |||....|||||||.|.|.||.||.|.||       |.|||  |||    
RBAM_029250__      1 ATGCAGGAAGGAAACAGCGTTGATATCAGGCCGCTCAGCTT--GAA----     44

BSNT_01985___     44 CGGATGCCGA--AGAAA---ATTTGCGGCTGCAAAGCGAAAATCGGGAT-     87
                      .|||||.||  ||.||   .|||     ||||.| ||.|||.|.|.|| 
RBAM_029250__     45 -TGATGCAGAGCAGGAACTGGTTT-----TGCAGA-CGGAAAACCGCATG     87

BSNT_01985___     88 TTTTTCGAACAATTTTCTAT---GATACGCACAGACGATTACTATACGGT    134
                     |||||.||||..|||.|.||   ||.||   .|||.||||..||||||.|
RBAM_029250__     88 TTTTTTGAACGGTTTGCCATGTCGAGAC---AAGAGGATTTTTATACGCT    134

BSNT_01985___    135 TGAGGGGCAAAGAAAACGAAT--AACCGAGTATCAGGAAAGACTTGAGAA    182
                     .||.||.|..|.|||||||||  |||    .||||...|||| .||.|.|
RBAM_029250__    135 GGAAGGCCGGAAAAAACGAATTGAAC----AATCACTGAAGA-ATGCGGA    179

BSNT_01985___    183 AGATGA---AGAATATCA-TTTTGGCATCTT--TACAGCGTCAGACGATA    226
                     |.||||   .||||| || .||.|||||.||  |.|||..||||.|..| 
RBAM_029250__    180 AAATGATACTGAATA-CAGCTTCGGCATTTTTCTTCAGGATCAGGCCCT-    227

BSNT_01985___    227 GATTAATCGGGACGGTTTCGCTCTTTCAAATCATCCGTGGAGCGCTGCAA    276
                     ||||    ||.|||.|....||.|||||..|..|.||.||..|.||.|||
RBAM_029250__    228 GATT----GGCACGATCAGCCTTTTTCAGGTGGTTCGGGGTTCCCTCCAA    273

BSNT_01985___    277 ACTGCGTTCATTGGGTATTTTTTAGA----CAAAGCCCATAATGG-AAAG    321
                     |..||.|||||.||.||.||||||||    .||    |||||.|| ||||
RBAM_029250__    274 AGCGCTTTCATCGGTTACTTTTTAGATGGTGAA----CATAACGGAAAAG    319

BSNT_01985___    322 GATATTATGACAGAGGCAGTCAGATTGGTTGTTGATTATGCGTTCCACGA    371
                     |.|| |..|||..||||.||.|...|||..||.||||||||.|||.|.||
RBAM_029250__    320 GCTA-TGCGACGAAGGCTGTTAAGCTGGCAGTCGATTATGCATTCAATGA    368

BSNT_01985___    372 ATTGAAACTGCATCGGATTGAAGCCGGTGTGATGCCCCGTAATCTCGGGT    421
                     ..||.|||||||||||||.||||||||.||.|||||.|..|||...|.||
RBAM_029250__    369 GCTGGAACTGCATCGGATAGAAGCCGGAGTCATGCCGCACAATAAGGCGT    418

BSNT_01985___    422 CCATGCGTGTTTTAGAAAAAGCGGGATTTCATAAAGAAGGCATCGCCCGA    471
                     |.||.||.||..|.||||||||.||.|||||||||||||||||.||..||
RBAM_029250__    419 CAATCCGGGTGCTCGAAAAAGCTGGCTTTCATAAAGAAGGCATTGCGAGA    468

BSNT_01985___    472 AAAAATGTAAAAATTAATGGCGTTTGGGAGGATCATCAAGTCCTTGCGAT    521
                     ||||||||||||||.|||||....|||||.||||||||.||.||.|||||
RBAM_029250__    469 AAAAATGTAAAAATAAATGGAAAATGGGAAGATCATCAGGTGCTGGCGAT    518

BSNT_01985___    522 TCTGAATCCTGATGACGAACAATAA    546
                     ..|..||||.||.||  .|||..| 
RBAM_029250__    519 CATACATCCGGAGGA--TACATGA-    540


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