Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04725 and RBAM_029160

See Amino acid alignment / Visit BSNT_04725 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:17
# Commandline: needle
#    -asequence dna-align/BSNT_04725___yumC.1.9828.seq
#    -bsequence dna-align/RBAM_029160___yumC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04725___yumC-RBAM_029160___yumC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04725___yumC-RBAM_029160___yumC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04725___yumC
# 2: RBAM_029160___yumC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity:     833/1002 (83.1%)
# Similarity:   833/1002 (83.1%)
# Gaps:           9/1002 ( 0.9%)
# Score: 3454.0
# 
#
#=======================================

BSNT_04725___      1 ATGCGAGAGGATACAAAGGTTTATGATATTACAATTATAGGCGGGGGACC     50
                     ||||.|||||||.|||||||||||||||||||..|.||.|||||.||.||
RBAM_029160__      1 ATGCAAGAGGATTCAAAGGTTTATGATATTACGGTCATCGGCGGCGGCCC     50

BSNT_04725___     51 GGTCGGCTTATTCACCGCTTTTTACGGCGGGATGAGACAGGCAAGAGTCA    100
                     |||||||.|.||.||||||||||||||.||.|||||||||||.||.||||
RBAM_029160__     51 GGTCGGCCTGTTTACCGCTTTTTACGGGGGAATGAGACAGGCGAGCGTCA    100

BSNT_04725___    101 AAATTATCGAAAGCCTGCCTCAGCTCGGCGGACAGCTTAGCGCCCTATAC    150
                     ||||.|||||.||||||||||||||.|||||.|||||.|||||.||.|||
RBAM_029160__    101 AAATCATCGAGAGCCTGCCTCAGCTTGGCGGCCAGCTCAGCGCGCTGTAC    150

BSNT_04725___    151 CCTGAGAAGTATATATATGATGTAGCGGGATTCCCGAAAATCCGTGCGCA    200
                     |||||.||.|||||.|||||||||||.|||||||||||||||||.||.||
RBAM_029160__    151 CCTGAAAAATATATTTATGATGTAGCCGGATTCCCGAAAATCCGCGCCCA    200

BSNT_04725___    201 AGAGCTTATCAATAACCTAAAAGAGCAAATGGCAAAATTCGACCAAACCA    250
                     |||.|||.|.||.||..|||||||||||||||||||.|||||.||.||||
RBAM_029160__    201 AGAACTTGTGAACAATTTAAAAGAGCAAATGGCAAAGTTCGATCAGACCA    250

BSNT_04725___    251 TTTGTCTGGAGCAAGCGGTTGAATCTGTTGAGAAACAAGCGGACGGCGTG    300
                     |.||..|.|||||.||.||||||||||||||.|||||.||||||||.|||
RBAM_029160__    251 TCTGCTTAGAGCAGGCCGTTGAATCTGTTGAAAAACAGGCGGACGGTGTG    300

BSNT_04725___    301 TTTAAGCTTGTAACAAATGAAGAAACCCACTACTCTAAAACGGTCATCAT    350
                     |||||||||||.||.|||..||||||.||.||.||.||||||||.||.||
RBAM_029160__    301 TTTAAGCTTGTCACGAATTCAGAAACGCATTATTCAAAAACGGTTATTAT    350

BSNT_04725___    351 CACTGCAGGAAACGGCGCATTCAAACCGAGAAAGCTGGAACTTGAAAATG    400
                     |||.||.||||||||||||||.||.|||||||||||.||.||.|||...|
RBAM_029160__    351 CACCGCGGGAAACGGCGCATTTAAGCCGAGAAAGCTTGAGCTGGAATCAG    400

BSNT_04725___    401 CCGAGCAGTATGAAGGCAAAAACCTCCATTACTTCGTTGATGATCTGCAA    450
                     |.||.||.|||||.|||||||||||.||.||||||.||||.||.|| |||
RBAM_029160__    401 CGGAACAATATGAGGGCAAAAACCTGCACTACTTCATTGACGACCT-CAA    449

BSNT_04725___    451 -AAATTCGCCGGCAGACGCGTTGCGATCCTTGGCGGTGGAGATTCCGCGG    499
                      .|||||||.||||||||||||||..|.||.|||||.||.||||||||||
RBAM_029160__    450 TCAATTCGCAGGCAGACGCGTTGCCGTTCTGGGCGGCGGCGATTCCGCGG    499

BSNT_04725___    500 TTGACTGGGCGCTTATGCTTGAGCCGATCGCAAAAGAAGT-ATCGATCAT    548
                     |||||||||||||.|||||||||||||||||.|||||||| |.| |||||
RBAM_029160__    500 TTGACTGGGCGCTCATGCTTGAGCCGATCGCGAAAGAAGTCAGC-ATCAT    548

BSNT_04725___    549 TCACCGCCGTGACAAGTTCCGTGCGCACGAGCACAGTGTGGAAAACCTTC    598
                     .|||||||||||.||.|||||.|||||.|||||||||||.||||||||||
RBAM_029160__    549 CCACCGCCGTGATAAATTCCGCGCGCATGAGCACAGTGTCGAAAACCTTC    598

BSNT_04725___    599 ATGCGTCGAAGGTTAATGTCCTGACACCATTCGTCCCTGCGGAGCTGATC    648
                     ||...||.||.||.||.||.||||||||.||.||.||.||.||.||..||
RBAM_029160__    599 ATAATTCTAAAGTCAACGTGCTGACACCGTTTGTTCCCGCTGAACTTGTC    648

BSNT_04725___    649 GGCGAAGACAAAATCGAACAGCTAGTGCTTGAAGAAGTGAAAGGCGACCG    698
                     ||.||||||...|||||||||||.||.||.||||||||||||||||||||
RBAM_029160__    649 GGTGAAGACCGGATCGAACAGCTCGTTCTCGAAGAAGTGAAAGGCGACCG    698

BSNT_04725___    699 CAAAGAGATTTTAGAAATTGATGACTTAATCGTCAACTACGGTTTCGTTT    748
                     .|||||.||..|.||||||||||||.|.|||||.||||||||.||.||||
RBAM_029160__    699 TAAAGAAATCATCGAAATTGATGACCTGATCGTAAACTACGGCTTTGTTT    748

BSNT_04725___    749 CATCTCTTGGACCGATCAAAAACTGGGGTCTGGACATCGAGAAAAATTCC    798
                     |.|||||.||.|||||.|||||||||||.||.||||||||||||||||||
RBAM_029160__    749 CTTCTCTCGGCCCGATTAAAAACTGGGGCCTTGACATCGAGAAAAATTCC    798

BSNT_04725___    799 ATTGTCGT-AAAATCAACAATGGAAACAAATATCGAAGGCTTCTTTGCAG    847
                     ||.||||| ||||.| ||.||||||||.|||||.||||||||||||||.|
RBAM_029160__    799 ATCGTCGTCAAAAGC-ACGATGGAAACGAATATTGAAGGCTTCTTTGCCG    847

BSNT_04725___    848 CAGGTGACATTTGTACATACGAAGGAAAAGTCAACCTGATTGCCAGCGGC    897
                     |.||.||.||.||.|||||.|||||.||||||||.|||||.||||||||.
RBAM_029160__    848 CCGGAGATATCTGCACATATGAAGGCAAAGTCAAGCTGATCGCCAGCGGT    897

BSNT_04725___    898 TTCGGTGAGGCACCGACAGCAGTGAACAACGCCAAGGCTTACATGGACCC    947
                     |||||.||.||.||||||||.|||||||||||.|||||||||||||||||
RBAM_029160__    898 TTCGGCGAAGCTCCGACAGCCGTGAACAACGCGAAGGCTTACATGGACCC    947

BSNT_04725___    948 GAAAGCCCGCGTACAGCCTCTTCACTCAACAAGTCTTTTTGAAAATAAAT    997
                     ||||||.|||||.||||||||.||.||.|||||..|.||||||   ||||
RBAM_029160__    948 GAAAGCGCGCGTCCAGCCTCTGCATTCTACAAGCATGTTTGAA---AAAT    994

BSNT_04725___    998 AA    999
                     ||
RBAM_029160__    995 AA    996


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