Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04725 and RBAM_029160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:17
# Commandline: needle
# -asequence dna-align/BSNT_04725___yumC.1.9828.seq
# -bsequence dna-align/RBAM_029160___yumC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04725___yumC-RBAM_029160___yumC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04725___yumC-RBAM_029160___yumC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04725___yumC
# 2: RBAM_029160___yumC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1002
# Identity: 833/1002 (83.1%)
# Similarity: 833/1002 (83.1%)
# Gaps: 9/1002 ( 0.9%)
# Score: 3454.0
#
#
#=======================================
BSNT_04725___ 1 ATGCGAGAGGATACAAAGGTTTATGATATTACAATTATAGGCGGGGGACC 50
||||.|||||||.|||||||||||||||||||..|.||.|||||.||.||
RBAM_029160__ 1 ATGCAAGAGGATTCAAAGGTTTATGATATTACGGTCATCGGCGGCGGCCC 50
BSNT_04725___ 51 GGTCGGCTTATTCACCGCTTTTTACGGCGGGATGAGACAGGCAAGAGTCA 100
|||||||.|.||.||||||||||||||.||.|||||||||||.||.||||
RBAM_029160__ 51 GGTCGGCCTGTTTACCGCTTTTTACGGGGGAATGAGACAGGCGAGCGTCA 100
BSNT_04725___ 101 AAATTATCGAAAGCCTGCCTCAGCTCGGCGGACAGCTTAGCGCCCTATAC 150
||||.|||||.||||||||||||||.|||||.|||||.|||||.||.|||
RBAM_029160__ 101 AAATCATCGAGAGCCTGCCTCAGCTTGGCGGCCAGCTCAGCGCGCTGTAC 150
BSNT_04725___ 151 CCTGAGAAGTATATATATGATGTAGCGGGATTCCCGAAAATCCGTGCGCA 200
|||||.||.|||||.|||||||||||.|||||||||||||||||.||.||
RBAM_029160__ 151 CCTGAAAAATATATTTATGATGTAGCCGGATTCCCGAAAATCCGCGCCCA 200
BSNT_04725___ 201 AGAGCTTATCAATAACCTAAAAGAGCAAATGGCAAAATTCGACCAAACCA 250
|||.|||.|.||.||..|||||||||||||||||||.|||||.||.||||
RBAM_029160__ 201 AGAACTTGTGAACAATTTAAAAGAGCAAATGGCAAAGTTCGATCAGACCA 250
BSNT_04725___ 251 TTTGTCTGGAGCAAGCGGTTGAATCTGTTGAGAAACAAGCGGACGGCGTG 300
|.||..|.|||||.||.||||||||||||||.|||||.||||||||.|||
RBAM_029160__ 251 TCTGCTTAGAGCAGGCCGTTGAATCTGTTGAAAAACAGGCGGACGGTGTG 300
BSNT_04725___ 301 TTTAAGCTTGTAACAAATGAAGAAACCCACTACTCTAAAACGGTCATCAT 350
|||||||||||.||.|||..||||||.||.||.||.||||||||.||.||
RBAM_029160__ 301 TTTAAGCTTGTCACGAATTCAGAAACGCATTATTCAAAAACGGTTATTAT 350
BSNT_04725___ 351 CACTGCAGGAAACGGCGCATTCAAACCGAGAAAGCTGGAACTTGAAAATG 400
|||.||.||||||||||||||.||.|||||||||||.||.||.|||...|
RBAM_029160__ 351 CACCGCGGGAAACGGCGCATTTAAGCCGAGAAAGCTTGAGCTGGAATCAG 400
BSNT_04725___ 401 CCGAGCAGTATGAAGGCAAAAACCTCCATTACTTCGTTGATGATCTGCAA 450
|.||.||.|||||.|||||||||||.||.||||||.||||.||.|| |||
RBAM_029160__ 401 CGGAACAATATGAGGGCAAAAACCTGCACTACTTCATTGACGACCT-CAA 449
BSNT_04725___ 451 -AAATTCGCCGGCAGACGCGTTGCGATCCTTGGCGGTGGAGATTCCGCGG 499
.|||||||.||||||||||||||..|.||.|||||.||.||||||||||
RBAM_029160__ 450 TCAATTCGCAGGCAGACGCGTTGCCGTTCTGGGCGGCGGCGATTCCGCGG 499
BSNT_04725___ 500 TTGACTGGGCGCTTATGCTTGAGCCGATCGCAAAAGAAGT-ATCGATCAT 548
|||||||||||||.|||||||||||||||||.|||||||| |.| |||||
RBAM_029160__ 500 TTGACTGGGCGCTCATGCTTGAGCCGATCGCGAAAGAAGTCAGC-ATCAT 548
BSNT_04725___ 549 TCACCGCCGTGACAAGTTCCGTGCGCACGAGCACAGTGTGGAAAACCTTC 598
.|||||||||||.||.|||||.|||||.|||||||||||.||||||||||
RBAM_029160__ 549 CCACCGCCGTGATAAATTCCGCGCGCATGAGCACAGTGTCGAAAACCTTC 598
BSNT_04725___ 599 ATGCGTCGAAGGTTAATGTCCTGACACCATTCGTCCCTGCGGAGCTGATC 648
||...||.||.||.||.||.||||||||.||.||.||.||.||.||..||
RBAM_029160__ 599 ATAATTCTAAAGTCAACGTGCTGACACCGTTTGTTCCCGCTGAACTTGTC 648
BSNT_04725___ 649 GGCGAAGACAAAATCGAACAGCTAGTGCTTGAAGAAGTGAAAGGCGACCG 698
||.||||||...|||||||||||.||.||.||||||||||||||||||||
RBAM_029160__ 649 GGTGAAGACCGGATCGAACAGCTCGTTCTCGAAGAAGTGAAAGGCGACCG 698
BSNT_04725___ 699 CAAAGAGATTTTAGAAATTGATGACTTAATCGTCAACTACGGTTTCGTTT 748
.|||||.||..|.||||||||||||.|.|||||.||||||||.||.||||
RBAM_029160__ 699 TAAAGAAATCATCGAAATTGATGACCTGATCGTAAACTACGGCTTTGTTT 748
BSNT_04725___ 749 CATCTCTTGGACCGATCAAAAACTGGGGTCTGGACATCGAGAAAAATTCC 798
|.|||||.||.|||||.|||||||||||.||.||||||||||||||||||
RBAM_029160__ 749 CTTCTCTCGGCCCGATTAAAAACTGGGGCCTTGACATCGAGAAAAATTCC 798
BSNT_04725___ 799 ATTGTCGT-AAAATCAACAATGGAAACAAATATCGAAGGCTTCTTTGCAG 847
||.||||| ||||.| ||.||||||||.|||||.||||||||||||||.|
RBAM_029160__ 799 ATCGTCGTCAAAAGC-ACGATGGAAACGAATATTGAAGGCTTCTTTGCCG 847
BSNT_04725___ 848 CAGGTGACATTTGTACATACGAAGGAAAAGTCAACCTGATTGCCAGCGGC 897
|.||.||.||.||.|||||.|||||.||||||||.|||||.||||||||.
RBAM_029160__ 848 CCGGAGATATCTGCACATATGAAGGCAAAGTCAAGCTGATCGCCAGCGGT 897
BSNT_04725___ 898 TTCGGTGAGGCACCGACAGCAGTGAACAACGCCAAGGCTTACATGGACCC 947
|||||.||.||.||||||||.|||||||||||.|||||||||||||||||
RBAM_029160__ 898 TTCGGCGAAGCTCCGACAGCCGTGAACAACGCGAAGGCTTACATGGACCC 947
BSNT_04725___ 948 GAAAGCCCGCGTACAGCCTCTTCACTCAACAAGTCTTTTTGAAAATAAAT 997
||||||.|||||.||||||||.||.||.|||||..|.|||||| ||||
RBAM_029160__ 948 GAAAGCGCGCGTCCAGCCTCTGCATTCTACAAGCATGTTTGAA---AAAT 994
BSNT_04725___ 998 AA 999
||
RBAM_029160__ 995 AA 996
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