Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04718 and RBAM_029120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_04718___yuiC.1.9828.seq
# -bsequence dna-align/RBAM_029120___yuiC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04718___yuiC-RBAM_029120___yuiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04718___yuiC-RBAM_029120___yuiC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04718___yuiC
# 2: RBAM_029120___yuiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 675
# Identity: 484/675 (71.7%)
# Similarity: 484/675 (71.7%)
# Gaps: 54/675 ( 8.0%)
# Score: 1628.0
#
#
#=======================================
BSNT_04718___ 1 ATGTTGAATATGATCAGACGTTTGCTGATGA-CCTG-TTTATTTCTGCTT 48
||||..||.||||||||..|..|.|||| |.|| |.|.|||..||
RBAM_029120__ 1 ---TTGACGATAATCAGACGCGTATTCATGATCGTGCTCTTTTTGGGC-- 45
BSNT_04718___ 49 GCATTTGGCA--CGACAT--TTTT--ATCAGTGTCAGGAATTGAAGCGAA 92
||| ||.|| |||||| |||| ||.| |.||..|||||||.||
RBAM_029120__ 46 GCA--TGCCATGCGACATACTTTTCCATAA----CCGGTGTTGAAGCAAA 89
BSNT_04718___ 93 GGACTTGTCAAAATGGGTGCAGGAACATCAGGAAAAGCAC----TTG--A 136
|||..||.||||.|||.||..||||||||..| ||.| ||| |
RBAM_029120__ 90 GGATCTGACAAATTGGATGACGGAACATCGCG----GCGCCGTTTTGAAA 135
BSNT_04718___ 137 AGCATGCAGGACTGACATTAAAAGCATTGCAGCAGAAACA-----AACAC 181
|.||| |.|.||| .|.||..||.|.|| .|||||.|| ||.|.
RBAM_029120__ 136 AACAT-CGGCACT-CCGTTTCAATCCTT---ACAGAATCAGCCGGAAAAG 180
BSNT_04718___ 182 AAACCACGTCCGCGGCTGAGGATAAAACTAAACCGTTAGAAGAGGCATTT 231
||..|| || .||| |||||| ||||||.|.|||||.||.|||
RBAM_029120__ 181 AAGGCA--TC--AGGC--AGGATA-----AAACCGCTGGAAGAAGCTTTT 219
BSNT_04718___ 232 GATTGGGATGAATATCCAGTC-CAAAGAGTAACAGCAACAGGCTACACAG 280
||.|||||....||||| ||| ||||..||.||.||.||.||.||.||.|
RBAM_029120__ 220 GACTGGGAACGCTATCC-GTCACAAAAGGTGACGGCCACCGGTTATACCG 268
BSNT_04718___ 281 CAGGAGCTGAGTCGACGGGCAAAAATCCCGGTGATCCATTATACGGGCTT 330
|.|||||.||.||.||.||.|||..||||||..||||....|||||..||
RBAM_029120__ 269 CCGGAGCGGAATCTACCGGAAAATCTCCCGGGCATCCGCAGTACGGAATT 318
BSNT_04718___ 331 ACATATTCAGGTGTGAAAGTGAAACGGGATTTATATTCCACGGTTGCTGC 380
|||||||||||.|||||.||.|||||.|||||||||||.||.|||||.||
RBAM_029120__ 319 ACATATTCAGGCGTGAAGGTCAAACGCGATTTATATTCAACTGTTGCGGC 368
BSNT_04718___ 381 TGACCCGTCCGTTTTCCCGATCGGAACAATTTTATTCATTCCGAACTACG 430
.||.|||||.||||||||||||||.||.|||.|.||.||.|||||.||||
RBAM_029120__ 369 CGATCCGTCTGTTTTCCCGATCGGGACGATTCTGTTTATACCGAATTACG 418
BSNT_04718___ 431 GTCTCGGCGTTGTAGCCGACACAGGATCAGCTATTAAGGGAAACCGCCTT 480
||..|||.|||||.|||||.|||||.|||...|||||.||.|.|||||||
RBAM_029120__ 419 GTTACGGGGTTGTCGCCGATACAGGCTCAAAAATTAAAGGCAGCCGCCTT 468
BSNT_04718___ 481 GATCTGTACTTTGAGACAGTCAAAGATGTATACAATGAATGGGGCAAAAA 530
||.||.||||||||.||.|||||.||.||.||.||..|.|||||||||||
RBAM_029120__ 469 GACCTCTACTTTGACACCGTCAAGGACGTCTATAACAATTGGGGCAAAAA 518
BSNT_04718___ 531 AACCCTTGATGTATATGTGATT-AAAAAGGGAACGGGAAAGATTACCGAG 579
|||.||||||||.||..||||| |||||||||||||.|.|| |.||||||
RBAM_029120__ 519 AACACTTGATGTCTACATGATTAAAAAAGGGAACGGCACAG-TGACCGAG 567
BSNT_04718___ 580 GATGAGCTTGAGAAGCTCAATGAAACAAAATCTTTGCAAGTGTTCAGAAA 629
||.||.||||..|||||.||.||||||||.||..||||||||||||||||
RBAM_029120__ 568 GACGAACTTGTAAAGCTGAACGAAACAAAGTCGATGCAAGTGTTCAGAAA 617
BSNT_04718___ 630 TCAATATAAAACGGTGAAAGAATAA 654
||||||.||||||||.|||||||||
RBAM_029120__ 618 TCAATACAAAACGGTAAAAGAATAA 642
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