Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04712 and RBAM_029060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_04712___yuiI.1.9828.seq
# -bsequence dna-align/RBAM_029060___yuiI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04712___yuiI-RBAM_029060___yuiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04712___yuiI-RBAM_029060___yuiI.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04712___yuiI
# 2: RBAM_029060___yuiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 952
# Identity: 591/952 (62.1%)
# Similarity: 591/952 (62.1%)
# Gaps: 164/952 (17.2%)
# Score: 1695.5
#
#
#=======================================
BSNT_04712___ 1 ATGAAAGAGCAAACAACAGACCGGACAAATGGCGGGACATC--------- 41
|||.|.| |.|||||| |.||| |||||...||
RBAM_029060__ 1 ATGGACG-GAAAACAA--------ATAAA--GCGGGGTTTCGCGCCGGCC 39
BSNT_04712___ 42 -----AAACGTATTTACGATTCCTGGTACGGAAGTGCGTATGATGTCTTC 86
|.||| ||.||||.||.||.||| |||.||
RBAM_029060__ 40 GGCCGATACG------CGGTTCCGGGCACAGAA----GTAAGA------- 72
BSNT_04712___ 87 ACGCAATG-----AAAA-----CCGTACCTATCACATTTTTATCTCGAAA 126
|.|||| |||| ||||||.||||..||.|||.||||....
RBAM_029060__ 73 --GAAATGCGCTCAAAAGGAGGCCGTACGTATCGTATCTTTGTCTCTTTT 120
BSNT_04712___ 127 CCT-AGTACG--CCGCCGCCACCCGCTGGTTATCCTGTGATTTATCTGCT 173
||| ||.|.| |||||..||.|| ||.|..||.||.||.||.|||||
RBAM_029060__ 121 CCTCAGGAAGAACCGCCTGCATCC---GGCTTCCCCGTCATATACCTGCT 167
BSNT_04712___ 174 GGATGCCAATTCTGTCTTCGGAACGATGACGGAAGCCGTTCGAATACAGG 223
.|||||.|||||.||.|||||.||.|||.|.|||||..|.||..|.||..
RBAM_029060__ 168 CGATGCGAATTCCGTATTCGGCACAATGGCCGAAGCTTTGCGGGTGCAAA 217
BSNT_04712___ 224 GACGCCGACCCGAAAAAACCGGGGTGATCCCTGCAGTGATCGTCGGCATT 273
|.||.||.||.||||||||.||.||..|.||.||.|||||.|||||.||.
RBAM_029060__ 218 GCCGACGGCCTGAAAAAACAGGCGTTGTTCCGGCGGTGATTGTCGGAATC 267
BSNT_04712___ 274 GGCTATGAGACAGCGGAGCCGTTCTCCTCAGCACGCCACCGGGATTTTAC 323
|||||...|||||...|||||||.|||.|.|.|||.|||.|.||||||||
RBAM_029060__ 268 GGCTACCCGACAGATCAGCCGTTTTCCGCCGAACGTCACAGTGATTTTAC 317
BSNT_04712___ 324 AATGCCAACAG----CCCAATC-GAAGCTGCCGG---AAAGGCCCG---- 361
.||||| | |..|||| ||| ||||||| | ||||
RBAM_029060__ 318 GATGCC----GCTTTCTGAATCAGAA-CTGCCGGTGCA----CCCGCGCG 358
BSNT_04712___ 362 --ACGGCAGAGAATGGCCGGAGCATGGCGGAGCGGAGGGCTTTTTCAGAT 409
.|||| ||||||.||.||.||.||.|||||.|..|||.|.||.|
RBAM_029060__ 359 GTGCGGC-----ATGGCCCGAACAGGGAGGGGCGGAAGCGTTTCTGAGTT 403
BSNT_04712___ 410 TTATTGAAGAGGATTTAAAACCGGAGATAGAACGAGATTACCAGATTGAT 459
||||.|||||.||..||||.||.|.|||.||.||.|||||.|.|||.||.
RBAM_029060__ 404 TTATAGAAGAAGAAGTAAAGCCCGCGATGGAGCGGGATTATCCGATCGAC 453
BSNT_04712___ 460 AAAAAAAGACAAACAATCTTTGGCCATTCGCTCGGAGGGCTTTTCGTGCT 509
|.|...||.||.||.||.||.|||||||||||.||.||.|||||.|||||
RBAM_029060__ 454 AGAGGCAGGCAGACGATTTTCGGCCATTCGCTGGGCGGTCTTTTTGTGCT 503
BSNT_04712___ 510 GCAGGTGCTGCTAACAAAGCCCGATGCGTTTCAAACGTATATCGCGGGAA 559
|||.|||||..|.||.|.|||.||...|||.||.||.|||.|.||.||.|
RBAM_029060__ 504 GCAAGTGCTTTTGACGAGGCCGGACATGTTCCAGACCTATGTTGCCGGGA 553
BSNT_04712___ 560 GTCCGTCCATTCATTGGAATAAACCGTTTATTCTCGAGAAAACGGACCAT 609
|||||||.|||||.|||||.||.|..|||||||..||.|||.||||.|.|
RBAM_029060__ 554 GTCCGTCAATTCACTGGAACAAGCGTTTTATTCAGGAAAAAGCGGAACGT 603
BSNT_04712___ 610 TT-------CGTCTCTCT-CACCAAGAAAAA----CAA-TCAGCCTATCA 646
|| ||.|||||| | |.|||| ||| |||||.|||
RBAM_029060__ 604 TTGTCAGACCGGCTCTCTGC-----GGAAAATCTTCAAGTCAGCGTAT-- 646
BSNT_04712___ 647 ATATCCTGCTTGCCGCAGGAG-AATTGGAGCAGCATCATAAAAGCCGGAT 695
||||.||.||.|||| |||||.|..|.|| |||||||| |
RBAM_029060__ 647 ------TGCTGGCTGCGGGAGAAATTGAAAAAACA-CATAAAAG-----T 684
BSNT_04712___ 696 -GAAT----GATAATGCAAGGGAGCTTTATGAGCGGCTGGCCGTT-TTAT 739
|||| .|..|.|||..||.|||.|| || |.|| ||||
RBAM_029060__ 685 AGAATCCCGCAGCACGCAGAGGCGCTGTA-------CT---CTTTATTAT 724
BSNT_04712___ 740 C------TGAA---CAAGGCATACGGGCAGAATTTTGCGAGTTTTCAGGA 780
| |||| .|.||..|.||.||.||||...||||||||..||||
RBAM_029060__ 725 CCGGATTTGAAGATGATGGAGTCCGTGCTGAATACAGCGAGTTTGAAGGA 774
BSNT_04712___ 781 GAAGGACATATTTCAGTTCTTCCTGTTTTGGTCAGCAGGGCGCTGCGTTT 830
||.||.||||||||.||.||.||.|||||..||||||||||.||||||||
RBAM_029060__ 775 GAGGGCCATATTTCTGTCCTGCCCGTTTTAATCAGCAGGGCCCTGCGTTT 824
BSNT_04712___ 831 -TGCGCTCCACCCTGACGGACCGCA----------TCTTTCAATGGGC-T 868
||| ||..|.||.|..|||||||| |||..| || |
RBAM_029060__ 825 CTGC-CTGAATCCGGGAGGACCGCATACCCCGTATTCTCCC-----GCAT 868
BSNT_04712___ 869 GA 870
||
RBAM_029060__ 869 GA 870
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