Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04710 and RBAM_029050

See Amino acid alignment / Visit BSNT_04710 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:16
# Commandline: needle
#    -asequence dna-align/BSNT_04710___dhbA.1.9828.seq
#    -bsequence dna-align/RBAM_029050___dhbA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04710___dhbA-RBAM_029050___dhbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04710___dhbA-RBAM_029050___dhbA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04710___dhbA
# 2: RBAM_029050___dhbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 824
# Identity:     561/824 (68.1%)
# Similarity:   561/824 (68.1%)
# Gaps:          91/824 (11.0%)
# Score: 1853.0
# 
#
#=======================================

BSNT_04710___      1 ATGAATGCAAAGAGTATAGAGGGAAAAATTGCTTTTATAACAGGGGCTGC     50
                     |||||              |||| ||||..||..||.|.||.||.||.||
RBAM_029050__      1 ATGAA--------------AGGG-AAAACGGCCGTTGTCACCGGCGCCGC     35

BSNT_04710___     51 CCAAGGAATAGGCGAAGCTGTTGCGCGGA----CGCTTGCCAGT------     90
                     .|||||.||.||.|||||          |    ||||||||..|      
RBAM_029050__     36 TCAAGGCATCGGAGAAGC----------AACAGCGCTTGCCCTTGCTGAA     75

BSNT_04710___     91 CAAGGCGCACATATTGCGGCAGTTGATTATA-ATCC---TGAAAAGCTG-    135
                     |||||||.|.||.|.||.||       |||| ||.|   ||||.|.||| 
RBAM_029050__     76 CAAGGCGTAAATGTGGCAGC-------TATAGATACAAATGAAGACCTGC    118

BSNT_04710___    136 -----GAAAAGG--TTGTGAGCAGCCT----CAAAGCAGAAGGCCGCCAT    174
                          |    ||  |..||| |||.||    ||||    ||||    |.|
RBAM_029050__    119 TTCTCG----GGCTTACTGA-CAGACTTCGGCAAA----AAGG----CGT    155

BSNT_04710___    175 GCAGAAGC-----TTTTCCTGCGGATGTGAGAGACAGCGCGGCGATTGAC    219
                     ||||..||     |||.|| ||.|||||....|||||.|||||..|..|.
RBAM_029050__    156 GCAGGCGCAGGGGTTTGCC-GCAGATGTATCTGACAGTGCGGCTGTCAAT    204

BSNT_04710___    220 GAGATCA-CGGCGCGCATCGAACGTGAAATGGGGCCGATTGATATTTTAG    268
                     ||.|||| ||.||| |.|.|||||.||.||||||||.|||||.||.||.|
RBAM_029050__    205 GATATCATCGCCGC-CGTTGAACGCGACATGGGGCCTATTGAAATATTGG    253

BSNT_04710___    269 TGAATGTAGCGGGTGTCCTTCGCCCGGGACTGATCCATTCGCTTAGCGAT    318
                     .|||.||.|||||.||.||.||.|||||.|.|.|.||.||.||.||.|||
RBAM_029050__    254 CGAACGTTGCGGGCGTGCTGCGGCCGGGTCCGGTGCAATCCCTCAGTGAT    303

BSNT_04710___    319 GAGGAATGGGAGGCGACGTTCTCAGTGAATTCGACTGGCGTATTTAACGC    368
                     ||.||.|||||....||.||.|||||.||||||||.|||||||||.|.|.
RBAM_029050__    304 GAAGATTGGGATCAAACATTTTCAGTTAATTCGACCGGCGTATTTCATGT    353

BSNT_04710___    369 CTCGCGTTCAGTCAGCAAATATATGATGGACCG----AAGATCAGGTTCG    414
                     .|||||..|.||.|||...||.|||||.||.||    |||    ||..|.
RBAM_029050__    354 GTCGCGGGCTGTAAGCCGGTACATGATTGAGCGGAAAAAG----GGCGCC    399

BSNT_04710___    415 ATTGTAACAGTCGGATCGAATGCTGCCGGTGTGCCAAGAACATCTATGGC    464
                     ||.||.||.|||||.||||||||.|||||.||.||..|..|.||.|||||
RBAM_029050__    400 ATCGTTACGGTCGGTTCGAATGCAGCCGGCGTTCCGCGTGCTTCCATGGC    449

BSNT_04710___    465 GGCATATGCGTCTTCAAAGGCTGCGGCTGTGATGTTTACGAAATGCCTTG    514
                     |||.||||||.|.|||||.||.||.||.||.|||||||||||||||||.|
RBAM_029050__    450 GGCTTATGCGGCGTCAAAAGCGGCTGCCGTCATGTTTACGAAATGCCTCG    499

BSNT_04710___    515 GCCTTGAGCTTGCAGAATACAATATTCGCTGCAACATTGTATCTCCCGGA    564
                     |.||.||||||||.|...|..||||.|||||||||||.||||||||.||.
RBAM_029050__    500 GACTGGAGCTTGCGGCCCATCATATCCGCTGCAACATCGTATCTCCGGGT    549

BSNT_04710___    565 TCAACGGAAACTGACATGCAGTGGTCATTATGGGCCGACGAGAATGGAG-    613
                     |||||||||||.|||||||||.||.|..|.|||...||||||||.|||| 
RBAM_029050__    550 TCAACGGAAACCGACATGCAGCGGGCGCTGTGGCAGGACGAGAACGGAGC    599

BSNT_04710___    614 -CGGAGCAAGTCATAAAAGGATCACTTGAGACATTTAAAACAGGGATCCC    662
                      |||.||  |||||.|.|||.||.|||||.||||.||||||.||.||.||
RBAM_029050__    600 CCGGGGC--GTCATCAGAGGTTCGCTTGATACATATAAAACGGGAATTCC    647

BSNT_04710___    663 GCTCAAAAAACTAGCCAAGCCTTCGGATATTGCGGATGCGGTGCTCTTTT    712
                     |||..||||.||.||.||||||||.||||||||..||||.||..|.|||.
RBAM_029050__    648 GCTTCAAAAGCTGGCGAAGCCTTCTGATATTGCAAATGCCGTTTTGTTTC    697

BSNT_04710___    713 TGGTTTCTGGCCAGGCAGGGCATATTACGATGCATAATTTATGCGTAGAT    762
                     |||.|||||..||||||...|||||||||||||||.||||||||||.|||
RBAM_029050__    698 TGGCTTCTGAACAGGCAAACCATATTACGATGCATGATTTATGCGTTGAT    747

BSNT_04710___    763 GGCGGCGCGACCTTAGGCGTGTAA    786
                     ||||||||.||.||||||||.|.|
RBAM_029050__    748 GGCGGCGCTACTTTAGGCGTTTGA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04710 and RBAM_029050

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
