Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04708 and RBAM_029040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:16
# Commandline: needle
# -asequence dna-align/BSNT_04708___dhbC.1.9828.seq
# -bsequence dna-align/RBAM_029040___dhbC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04708___dhbC-RBAM_029040___dhbC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04708___dhbC-RBAM_029040___dhbC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04708___dhbC
# 2: RBAM_029040___dhbC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity: 823/1281 (64.2%)
# Similarity: 823/1281 (64.2%)
# Gaps: 168/1281 (13.1%)
# Score: 2409.0
#
#
#=======================================
BSNT_04708___ 1 ATGTTGGATCAAAACGTTATAACAGAAA-------CAAAAGCGGAGCATT 43
|||....|||||.| .||||....|.|| ||||||.||
RBAM_029040__ 1 ATGACAAATCAACA-TTTATTGGCGGAAGTGTCTGCAAAAGAGG------ 43
BSNT_04708___ 44 TGCTTCATGAATATCAGCCGGGCGCCTTTTTCTTAGCGTCTCCTCATCGT 93
||||..|.|..||..||||.||.||.||.||.|||||.|||||..| ..
RBAM_029040__ 44 TGCTGGACGCTTACAAGCCCGGGGCGTTCTTTTTAGCTTCTCCGAA--AA 91
BSNT_04708___ 94 GTAC--TGTTAGCGAAAGGTATATGT---GAAATCGTACCGGAGGCAGAC 138
|||| ||.|.|||.||||.||.|.| ||| ||.||.||..|||||
RBAM_029040__ 92 GTACGATGCTTGCGGAAGGAATGTTTGCGGAA---GTGCCTGATACAGAC 138
BSNT_04708___ 139 GGGCAAAACCAAATGGAAACCCTTT--CTGGCCGAATTGC-----AGAGA 181
|.|.||||.||..|||| || |||.|.||| .|| |.|||
RBAM_029040__ 139 GCGGAAAATCAGCTGGA------TTCACTGCCTGAA-CGCGTGAGACAGA 181
BSNT_04708___ 182 CGCTGCGTCAGGCAAAACAATCAGG--GCAAAGCCGGCCGCTTGTTGTCG 229
||||.|.|.|||||||.|||.|.|| .|||| |..|||.|||..|.||
RBAM_029040__ 182 CGCTTCTTGAGGCAAAGCAAGCCGGCATCAAA--CATCCGATTGCGGCCG 229
BSNT_04708___ 230 GGGCCGTTCCTTTTGA--TCAAGTAAAAGCAGCGCGGCTCGTTGTACCTG 277
|.|||.|||||||||| .|| .||||||..|.|||||..||||||| |
RBAM_029040__ 230 GCGCCATTCCTTTTGACGGCA--GAAAAGCTTCCCGGCTTTTTGTACC-G 276
BSNT_04708___ 278 AAGAA-GTGCGCTGGTCAGGACCGCTTCAATTTG----ATCAT--GAGGA 320
||||| ||.|....|.||||.||||||...|||| |||.| |..||
RBAM_029040__ 277 AAGAATGTCCATACGGCAGGCCCGCTTTCGTTTGCGGAATCGTCCGCAGA 326
BSNT_04708___ 321 AAAGGAACAGCAGGCTGGGC-ATACATACCACATAAAGCCTGTTCCTGAA 369
|||| |.|||..| | |||||||..||||....||.|||||.||.
RBAM_029040__ 327 AAAG---CCGCAATC----CAATACATATGACATCCGTCCCGTTCCGGAG 369
BSNT_04708___ 370 CCTGAGGATTATAAAAATGGTGTTGAACAAGGGCTGA--CACGCATTGCC 417
|||||||..|.||..|..|||||.|||||| |||..| || |||||.|.
RBAM_029040__ 370 CCTGAGGGCTTTATGAGCGGTGTGGAACAA-GGCGTATTCA-GCATTACG 417
BSNT_04708___ 418 GATGGAACACTCAGCAAAATCGTCCTGTCCAGATCGCTGCATTTGACATC 467
||.||..|.||||||||||||||.|||||.||..||||.|||.|||| |
RBAM_029040__ 418 GACGGTCCGCTCAGCAAAATCGTGCTGTCAAGGACGCTTCATCTGAC--C 465
BSNT_04708___ 468 GCCTGAACCGATTCAGACGGATGAATTG--CTTC-----GC-------CA 503
| ||||| |.|||| ||.| .||| || ||
RBAM_029040__ 466 G-CTGAA---------AAGGAT--ATCGACATTCCACAGGCCGTCAAGCA 503
BSNT_04708___ 504 TCTGGCTCAGCATAACTCGCATGGCTACACGTTTGCCGCAGACGTGTCCA 553
|.||||.||.||.|||.|||..|||||.||.||.||.||.||.|||.|
RBAM_029040__ 504 TTTGGCGCAACACAACCCGCGCGGCTATACATTCGCTGCGGATGTGAC-- 551
BSNT_04708___ 554 GTCAGGAGGAAACGTCTCCCCGCCGAA------------CATTGCTCGGA 591
||.||||| |.||| |.|| ||||.
RBAM_029040__ 552 -------GGGAACGT-------CAGAAACAAGAAAAACGCTTT--TCGGC 585
BSNT_04708___ 592 GCAAGTCCGGAGCTCCTCGTTTCAAGGATGGGAACACAGGTCG----TTT 637
||||||||.||.||.||..|.||.|..|..|||||| ||| |.|
RBAM_029040__ 586 GCAAGTCCTGAACTGCTGCTGTCCAAAAACGGAACA----TCGATTCTGT 631
BSNT_04708___ 638 CCAACCCATTAGCCGGCTCAAGACCGCGCAGTAATGATCCTGTTGAAGAC 687
||||.||..|.||.||.||.|||||.|||||.|..|||||.|..||.||.
RBAM_029040__ 632 CCAATCCGCTGGCAGGTTCCAGACCTCGCAGCACAGATCCCGCCGAGGAT 681
BSNT_04708___ 688 CAGCGCCGGGCAGCTGAATTGCTTTCTTCCGCAAAGGATCTTCATGAGCA 737
|||.|..|.||.|..|||.||||....||.|||||.|||||.|||||.||
RBAM_029040__ 682 CAGAGAAGAGCGGAAGAACTGCTGCAATCAGCAAAAGATCTGCATGAACA 731
BSNT_04708___ 738 CGCGGTTGTCGCTGACGCGGTTGCGGCAGCGCTGAGACCTTTCTGCCGGA 787
.||.||.||||..|.|||.||.||.||.||.||.|.|||.||||||||..
RBAM_029040__ 732 TGCCGTAGTCGTGGCCGCCGTGGCCGCCGCCCTTAAACCGTTCTGCCGTG 781
BSNT_04708___ 788 CGCTGGAGGTTCCGGAGAAGCCTTCACTGATCAAAACGGAAACGATGTGG 837
.|||.||.||.|||||.||.||.|||||.||.|||||.||..||||||||
RBAM_029040__ 782 TGCTTGATGTGCCGGAAAAACCGTCACTCATTAAAACTGAGGCGATGTGG 831
BSNT_04708___ 838 CACCTGTCCAGCGTGATTAAGGGAGAGCTTTCCGATCCGTCTGTAACCG- 886
||||||||||.||.|.|.|||||||||||....|||||||| |.||
RBAM_029040__ 832 CACCTGTCCACCGAGGTGAAGGGAGAGCTGCGTGATCCGTC----AACGA 877
BSNT_04708___ 887 ---CACTTGAATTAGC-GGC---GGCGCTCCACCCGACGCCAGCCGTCTG 929
|||||| ||| ||| .||.||.||.|||||.||.||.||.||
RBAM_029040__ 878 CATCACTTG----AGCTGGCCATCGCCCTGCATCCGACACCCGCGGTATG 923
BSNT_04708___ 930 CGGAACACCGACTGATCTTGCAAGAGAAGCGATTCTCAG--CATTGAACC 977
||||||.|||||.|||...||.||||||||||| |||| .|||||.||
RBAM_029040__ 924 CGGAACGCCGACGGATGCGGCGAGAGAAGCGAT--TCAGGATATTGAGCC 971
BSNT_04708___ 978 ATTTGACCGCGGTTTCTTTACCGGCATGGTCGGATGGTGTGACGATGCCG 1027
.|||||||||..|||||..||.||.||||..||.||||||||.|.||..|
RBAM_029040__ 972 GTTTGACCGCAATTTCTACACGGGAATGGCGGGCTGGTGTGATGCTGAGG 1021
BSNT_04708___ 1028 GTGACGGAGAATGG---ATCGTGACCA-TCCGTTGTGCAGAAGCAGAAGA 1073
||.||||||||||| |||| || ||||.||.||.|||||.|||..
RBAM_029040__ 1022 GTAACGGAGAATGGATTATCG----CACTCCGCTGCGCCGAAGCGGAAAC 1067
BSNT_04708___ 1074 ACGCTCTCTCCGCCTGTATGCTGGAGCTGGTGTTGTGGCCGGTTCAAAGC 1123
|.|.||||||||.||.|.|||.||.||.||..||||.|||||.|||||||
RBAM_029040__ 1068 AAGGTCTCTCCGGCTCTTTGCGGGTGCCGGGATTGTCGCCGGATCAAAGC 1117
BSNT_04708___ 1124 CCGAGGACGAGCTTCAGGAGACGTCCGCAAAGTTTCGGACAATGCTGCGG 1173
|..||||.||.||..|.|||||.||.||.||.||.||.||.|||||.|||
RBAM_029040__ 1118 CGCAGGATGAACTGGACGAGACCTCGGCCAAATTCCGCACCATGCTCCGG 1167
BSNT_04708___ 1174 GCAATGGGCGTGGATCACATATGA------- 1197
||.|||||..|..|.|| |.||||
RBAM_029040__ 1168 GCGATGGGGCTTTACCA-AGATGAGTTGTAA 1197
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