Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04707 and RBAM_029030

See Amino acid alignment / Visit BSNT_04707 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:15
# Commandline: needle
#    -asequence dna-align/BSNT_04707___dhbE.1.9828.seq
#    -bsequence dna-align/RBAM_029030___dhbE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04707___dhbE-RBAM_029030___dhbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04707___dhbE-RBAM_029030___dhbE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04707___dhbE
# 2: RBAM_029030___dhbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1658
# Identity:    1208/1658 (72.9%)
# Similarity:  1208/1658 (72.9%)
# Gaps:          70/1658 ( 4.2%)
# Score: 4212.5
# 
#
#=======================================

BSNT_04707___      1 ATGCTGAAAGGATTTACGCCTTGGCCTGATGAGTTAGCTGAGACCTATCG     50
                     .||||||..|||||||||||.|||||.||.||.|..|||||.|..||.||
RBAM_029030__      1 GTGCTGACTGGATTTACGCCATGGCCGGAAGAATGGGCTGACAAATACCG     50

BSNT_04707___     51 AAAGAATGGCTGCTGGGCCGGCGAGACGTTTGG-GGATTTGTTAAGAGAC     99
                     |||..|.|||||||||...||.||||||||.|| ||| .||.|.|.|||.
RBAM_029030__     51 AAAAGACGGCTGCTGGAAGGGTGAGACGTTCGGAGGA-ATGCTGAAAGAG     99

BSNT_04707___    100 CGGGCAGCCAAATATGGCGACCGCATTGCGATTACATGCGGAAACA--CC    147
                     ||.||.||...|||.||..|.|..|.|||..|.||  |.|.|||.|  ..
RBAM_029030__    100 CGCGCGGCTTTATACGGAAATCAAACTGCCGTGAC--GTGTAAAGATGTA    147

BSNT_04707___    148 CATTGGAGCTATCAAGAGCTTGACACAAGGGTTGATCGTTTGGCTGCCGG    197
                     |||||||.|||..||||..|.||...|||||..||||||||.||.||.||
RBAM_029030__    148 CATTGGACCTACAAAGAATTAGATGAAAGGGCAGATCGTTTAGCGGCGGG    197

BSNT_04707___    198 ATTTCAGAAGCTCGGCATTCAACAGATGGATCGTGTCGTGGTGCAGCTGC    247
                     ..|.||.||||||||.||||||.||...||.||.||.||.||.|||||||
RBAM_029030__    198 GCTGCATAAGCTCGGAATTCAAAAGGAAGACCGCGTTGTCGTTCAGCTGC    247

BSNT_04707___    248 CAAATATCAAAGAGTTTTTTGAAGTCATTTTCGCGCTTTTCCGTCTGGGG    297
                     |.||||||...||||||||||||||.|||||||||||.|||||.|||||.
RBAM_029030__    248 CGAATATCGCTGAGTTTTTTGAAGTGATTTTCGCGCTGTTCCGGCTGGGA    297

BSNT_04707___    298 GCGCTTCCAGTCTTCGCACTGCCTTCTCATCGAAGCAGTGAAATTACATA    347
                     |||||.||.||.|||||.||||||||||||.||||||||||.|||||.||
RBAM_029030__    298 GCGCTGCCCGTTTTCGCGCTGCCTTCTCATAGAAGCAGTGAGATTACGTA    347

BSNT_04707___    348 TTTTTGCGAGTTTGCTGAAGCGGCTGCATATATCATTCCCG--ACGCTTA    395
                     |||.|||||||||||.||.|||...|||||.||||||||.|  |.||  |
RBAM_029030__    348 TTTCTGCGAGTTTGCAGAGGCGAAAGCATACATCATTCCTGATATGC--A    395

BSNT_04707___    396 TTCCGGTTTTGACTATCGTACGCTTGCCAGACAGGTTCAAAG-CAAGTTG    444
                     |||.||||||||.||..|..||||||||||||||| |.|||| |||..|.
RBAM_029030__    396 TTCAGGTTTTGATTACAGGGCGCTTGCCAGACAGG-TGAAAGACAAACTT    444

BSNT_04707___    445 CCGACTTTGAAAAACATCATTGTCGCAGGTGAGGCAGAGGAATTTTTGCC    494
                     |||..||||....|..|||||||.||.||.||.||.||.||.|||..|..
RBAM_029030__    445 CCGGATTTGGCGCATGTCATTGTGGCCGGCGAAGCTGAAGAGTTTCAGGA    494

BSNT_04707___    495 GCTCGAGGA-TTTGCATACAGAACCTGTAAAACTGCCTGAAGTCAAAT--    541
                     .|| |||.| ..||||||.|||.|||||..|.|||   ||||  |.||  
RBAM_029030__    495 ACT-GAGCAGCCTGCATAGAGAGCCTGTTCAGCTG---GAAG--ATATAA    538

BSNT_04707___    542 ---CTTCGGATGTGGCGTTCCTCCAGCTTTCTGGCGGGAGCACCGGGCTA    588
                        |..||||.||.||.||..|.||||||||.||.||.||.||.|||||.
RBAM_029030__    539 GCCCGGCGGAAGTCGCCTTTTTACAGCTTTCAGGAGGCAGTACGGGGCTG    588

BSNT_04707___    589 TCGAAACTGATTCCGAGGACCCACGATGACTACATATACAGCCTGAAGCG    638
                     ||.||.|||||||||.|.||.|||||.||.|||||||||||..|   |||
RBAM_029030__    589 TCCAAGCTGATTCCGCGAACACACGACGATTACATATACAGTTT---GCG    635

BSNT_04707___    639 ---GAGTGTGGAGGTCTGCTGGCTCG----ACCACAGCACGGTGTACTTG    681
                        .||.|.|||..|.||| ||||.|    |.||||||   ||.||.|||
RBAM_029030__    636 CATCAGCGCGGAAATATGC-GGCTTGGATCAACACAGC---GTTTATTTG    681

BSNT_04707___    682 GCCGCGCTGCCGATGGCACATAATTATCCGCTGAGCTCACCTGGCGTTCT    731
                     |||||.|||||||..||.||||||||||||||.|||||.||.||.||.||
RBAM_029030__    682 GCCGCTCTGCCGACAGCGCATAATTATCCGCTCAGCTCGCCGGGTGTGCT    731

BSNT_04707___    732 CGGCGTATTATACGCTGGAGGAAGAGTGGTATTATCTCCTTCTCCAAGTC    781
                     .||....|||||.||.|||||..|.||.||..|.||.||..|.||.||.|
RBAM_029030__    732 GGGAACTTTATATGCCGGAGGCCGGGTTGTTCTGTCACCGACGCCGAGCC    781

BSNT_04707___    782 CAGATGAC-GCATTTCCTTTAATTGAACGGGAAAAG-----GTCACGATA    825
                     |.|||||| || ||.||.||||||||     |||||     ||||||||.
RBAM_029030__    782 CGGATGACTGC-TTCCCGTTAATTGA-----AAAAGAACGTGTCACGATT    825

BSNT_04707___    826 ACCGCTCTTGTTCCGCCTCTTGCGATGGTATGGATGGATGCGGCATCCTC    875
                     ||.||.||.||.|||||.|||||||||||.||||||||.||..||...||
RBAM_029030__    826 ACAGCGCTCGTCCCGCCGCTTGCGATGGTGTGGATGGACGCATCAGGTTC    875

BSNT_04707___    876 ACGCTGTGATGATTTATCCAGCCTTCAAGTGCTGCAGGTCGGCGGTGCCA    925
                     .||..|||||||||||||.||||||||||||||||||||.||.||.||||
RBAM_029030__    876 GCGAAGTGATGATTTATCAAGCCTTCAAGTGCTGCAGGTGGGAGGCGCCA    925

BSNT_04707___    926 AGTTTAGTGCTGAAGCCGCGCGCAGGGTAAA-AGCTGTTTTCGGCTGCAC    974
                     |.||.||.|||||.||.||.|||.|.||||| ||| |.||||||.|||||
RBAM_029030__    926 AATTCAGCGCTGAGGCGGCCCGCCGCGTAAAGAGC-GCTTTCGGATGCAC    974

BSNT_04707___    975 GCTGCAGCAGGTATTCGGAATGGCAGAGGGTCTCGTCAATTATACGAGAT   1024
                     .||.||||||||.|||||||||||.||.||..|.||.||||||||||||.
RBAM_029030__    975 CCTTCAGCAGGTTTTCGGAATGGCGGAAGGATTGGTGAATTATACGAGAC   1024

BSNT_04707___   1025 TGGATGATCCTGAGGAGATCATTGTCAACACCCAAGGAAAACCGATGTCC   1074
                     |||||||||||||.||||||||||||||.||.|||||.|.|||||||||.
RBAM_029030__   1025 TGGATGATCCTGAAGAGATCATTGTCAATACGCAAGGCAGACCGATGTCA   1074

BSNT_04707___   1075 CCATATGATGAAGTGCGTGTTTGGGATGATCATGATCGCGACGTAAAACC   1124
                     ||.|.||||||.||..|.||||..||.|||.|.|..||.||.||....||
RBAM_029030__   1075 CCTTTTGATGAGGTAAGGGTTTTAGACGATGACGGGCGGGATGTCGCCCC   1124

BSNT_04707___   1125 TGGTGAAACAGGCCATCTGCTGACGCGGGGACCGTATACAATTCGCGGTT   1174
                     .||||||.|.||.|||.||.|.||.||.||.||.||.||.||||||||.|
RBAM_029030__   1125 CGGTGAAGCGGGACATTTGTTTACACGCGGCCCTTACACGATTCGCGGAT   1174

BSNT_04707___   1175 ACTATAAGGCGGAAGAGCATAATGCTGCTTCATTTACTGAGGACGGTTTT   1224
                     |.|||||.|||...||.|||||||.....|||||.||.|..|||||.|||
RBAM_029030__   1175 ATTATAAAGCGCCTGAACATAATGAAAGATCATTCACAGCCGACGGATTT   1224

BSNT_04707___   1225 TACCGCACGGGTGATATCGTCAGGCTGAC-ACGAGACGGCTATATTGTCG   1273
                     ||.|..||.||.||||||||||..||||| .|| |||||||||||..|||
RBAM_029030__   1225 TATCAGACCGGCGATATCGTCAAACTGACGGCG-GACGGCTATATCATCG   1273

BSNT_04707___   1274 TTGAAGGCCGTGCGAAGGATCAAATTAACCGTGGGGGAGAAAAGGTTGCG   1323
                     |.|||||.||||||||.||||||||.||.||.||.||.|||||..|.||.
RBAM_029030__   1274 TCGAAGGACGTGCGAAAGATCAAATCAATCGGGGCGGTGAAAAAATAGCC   1323

BSNT_04707___   1324 GCTGAAGAGGTAGAAAATCATCTGCTGGCGCATCCGGCTGTCCATGATGC   1373
                     |||||.|||||.||||||||.||.||.||||||||.||.||.||||||||
RBAM_029030__   1324 GCTGAGGAGGTGGAAAATCACCTTCTTGCGCATCCTGCCGTTCATGATGC   1373

BSNT_04707___   1374 GGCAATGGTCTCCATGCCTGATCAATTTCTTGGCGAGAGATCTTGTGTGT   1423
                     |||.|||||.||.|||||.|||.|.|||||.||.|||.||||.|||||||
RBAM_029030__   1374 GGCCATGGTTTCAATGCCGGATGATTTTCTCGGGGAGCGATCCTGTGTGT   1423

BSNT_04707___   1424 TCATTATTCCCAGAGATGAAGCCCCAAAAGCCGCAGAGCTCAAAGCATTT   1473
                     ||.|.||.||.|.||..|||||.||.|||.|.|.||||||.|||||||||
RBAM_029030__   1424 TCGTCATCCCAAAAGGAGAAGCGCCGAAACCGGGAGAGCTGAAAGCATTT   1473

BSNT_04707___   1474 TTGAGAGAGCGCGGACTGGCGGCATATAAAATCCCTGACCGAGTTGAATT   1523
                     |||.|.|||||||||||||||||||||||||||||.|||||..|||||||
RBAM_029030__   1474 TTGCGTGAGCGCGGACTGGCGGCATATAAAATCCCCGACCGGATTGAATT   1523

BSNT_04707___   1524 TGTCGAATCCTTCCCGCAGACAGGGGTAGGAAAGGTAAGCAAAAAGGCTC   1573
                     |.|||..||.||||||.|.||.||.||.||.|||||.||.|||||||.||
RBAM_029030__   1524 TATCGCTTCTTTCCCGAAAACCGGCGTCGGCAAGGTCAGTAAAAAGGATC   1573

BSNT_04707___   1574 TTCGTGAAGCTATTTCCGAAAAACTTCTTGCAGG--GGC---AAAAAAAT   1618
                     ||||.|||.|.||..||.|||||.|     .|.|  |||   ||..|||.
RBAM_029030__   1574 TTCGCGAAACGATCGCCCAAAAAGT-----AAAGCCGGCTGAAATCAAAC   1618

BSNT_04707___   1619 AA------   1620
                     ||      
RBAM_029030__   1619 AATCTTAA   1626


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