Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04707 and RBAM_029030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:15
# Commandline: needle
# -asequence dna-align/BSNT_04707___dhbE.1.9828.seq
# -bsequence dna-align/RBAM_029030___dhbE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04707___dhbE-RBAM_029030___dhbE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04707___dhbE-RBAM_029030___dhbE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04707___dhbE
# 2: RBAM_029030___dhbE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1658
# Identity: 1208/1658 (72.9%)
# Similarity: 1208/1658 (72.9%)
# Gaps: 70/1658 ( 4.2%)
# Score: 4212.5
#
#
#=======================================
BSNT_04707___ 1 ATGCTGAAAGGATTTACGCCTTGGCCTGATGAGTTAGCTGAGACCTATCG 50
.||||||..|||||||||||.|||||.||.||.|..|||||.|..||.||
RBAM_029030__ 1 GTGCTGACTGGATTTACGCCATGGCCGGAAGAATGGGCTGACAAATACCG 50
BSNT_04707___ 51 AAAGAATGGCTGCTGGGCCGGCGAGACGTTTGG-GGATTTGTTAAGAGAC 99
|||..|.|||||||||...||.||||||||.|| ||| .||.|.|.|||.
RBAM_029030__ 51 AAAAGACGGCTGCTGGAAGGGTGAGACGTTCGGAGGA-ATGCTGAAAGAG 99
BSNT_04707___ 100 CGGGCAGCCAAATATGGCGACCGCATTGCGATTACATGCGGAAACA--CC 147
||.||.||...|||.||..|.|..|.|||..|.|| |.|.|||.| ..
RBAM_029030__ 100 CGCGCGGCTTTATACGGAAATCAAACTGCCGTGAC--GTGTAAAGATGTA 147
BSNT_04707___ 148 CATTGGAGCTATCAAGAGCTTGACACAAGGGTTGATCGTTTGGCTGCCGG 197
|||||||.|||..||||..|.||...|||||..||||||||.||.||.||
RBAM_029030__ 148 CATTGGACCTACAAAGAATTAGATGAAAGGGCAGATCGTTTAGCGGCGGG 197
BSNT_04707___ 198 ATTTCAGAAGCTCGGCATTCAACAGATGGATCGTGTCGTGGTGCAGCTGC 247
..|.||.||||||||.||||||.||...||.||.||.||.||.|||||||
RBAM_029030__ 198 GCTGCATAAGCTCGGAATTCAAAAGGAAGACCGCGTTGTCGTTCAGCTGC 247
BSNT_04707___ 248 CAAATATCAAAGAGTTTTTTGAAGTCATTTTCGCGCTTTTCCGTCTGGGG 297
|.||||||...||||||||||||||.|||||||||||.|||||.|||||.
RBAM_029030__ 248 CGAATATCGCTGAGTTTTTTGAAGTGATTTTCGCGCTGTTCCGGCTGGGA 297
BSNT_04707___ 298 GCGCTTCCAGTCTTCGCACTGCCTTCTCATCGAAGCAGTGAAATTACATA 347
|||||.||.||.|||||.||||||||||||.||||||||||.|||||.||
RBAM_029030__ 298 GCGCTGCCCGTTTTCGCGCTGCCTTCTCATAGAAGCAGTGAGATTACGTA 347
BSNT_04707___ 348 TTTTTGCGAGTTTGCTGAAGCGGCTGCATATATCATTCCCG--ACGCTTA 395
|||.|||||||||||.||.|||...|||||.||||||||.| |.|| |
RBAM_029030__ 348 TTTCTGCGAGTTTGCAGAGGCGAAAGCATACATCATTCCTGATATGC--A 395
BSNT_04707___ 396 TTCCGGTTTTGACTATCGTACGCTTGCCAGACAGGTTCAAAG-CAAGTTG 444
|||.||||||||.||..|..||||||||||||||| |.|||| |||..|.
RBAM_029030__ 396 TTCAGGTTTTGATTACAGGGCGCTTGCCAGACAGG-TGAAAGACAAACTT 444
BSNT_04707___ 445 CCGACTTTGAAAAACATCATTGTCGCAGGTGAGGCAGAGGAATTTTTGCC 494
|||..||||....|..|||||||.||.||.||.||.||.||.|||..|..
RBAM_029030__ 445 CCGGATTTGGCGCATGTCATTGTGGCCGGCGAAGCTGAAGAGTTTCAGGA 494
BSNT_04707___ 495 GCTCGAGGA-TTTGCATACAGAACCTGTAAAACTGCCTGAAGTCAAAT-- 541
.|| |||.| ..||||||.|||.|||||..|.||| |||| |.||
RBAM_029030__ 495 ACT-GAGCAGCCTGCATAGAGAGCCTGTTCAGCTG---GAAG--ATATAA 538
BSNT_04707___ 542 ---CTTCGGATGTGGCGTTCCTCCAGCTTTCTGGCGGGAGCACCGGGCTA 588
|..||||.||.||.||..|.||||||||.||.||.||.||.|||||.
RBAM_029030__ 539 GCCCGGCGGAAGTCGCCTTTTTACAGCTTTCAGGAGGCAGTACGGGGCTG 588
BSNT_04707___ 589 TCGAAACTGATTCCGAGGACCCACGATGACTACATATACAGCCTGAAGCG 638
||.||.|||||||||.|.||.|||||.||.|||||||||||..| |||
RBAM_029030__ 589 TCCAAGCTGATTCCGCGAACACACGACGATTACATATACAGTTT---GCG 635
BSNT_04707___ 639 ---GAGTGTGGAGGTCTGCTGGCTCG----ACCACAGCACGGTGTACTTG 681
.||.|.|||..|.||| ||||.| |.|||||| ||.||.|||
RBAM_029030__ 636 CATCAGCGCGGAAATATGC-GGCTTGGATCAACACAGC---GTTTATTTG 681
BSNT_04707___ 682 GCCGCGCTGCCGATGGCACATAATTATCCGCTGAGCTCACCTGGCGTTCT 731
|||||.|||||||..||.||||||||||||||.|||||.||.||.||.||
RBAM_029030__ 682 GCCGCTCTGCCGACAGCGCATAATTATCCGCTCAGCTCGCCGGGTGTGCT 731
BSNT_04707___ 732 CGGCGTATTATACGCTGGAGGAAGAGTGGTATTATCTCCTTCTCCAAGTC 781
.||....|||||.||.|||||..|.||.||..|.||.||..|.||.||.|
RBAM_029030__ 732 GGGAACTTTATATGCCGGAGGCCGGGTTGTTCTGTCACCGACGCCGAGCC 781
BSNT_04707___ 782 CAGATGAC-GCATTTCCTTTAATTGAACGGGAAAAG-----GTCACGATA 825
|.|||||| || ||.||.|||||||| ||||| ||||||||.
RBAM_029030__ 782 CGGATGACTGC-TTCCCGTTAATTGA-----AAAAGAACGTGTCACGATT 825
BSNT_04707___ 826 ACCGCTCTTGTTCCGCCTCTTGCGATGGTATGGATGGATGCGGCATCCTC 875
||.||.||.||.|||||.|||||||||||.||||||||.||..||...||
RBAM_029030__ 826 ACAGCGCTCGTCCCGCCGCTTGCGATGGTGTGGATGGACGCATCAGGTTC 875
BSNT_04707___ 876 ACGCTGTGATGATTTATCCAGCCTTCAAGTGCTGCAGGTCGGCGGTGCCA 925
.||..|||||||||||||.||||||||||||||||||||.||.||.||||
RBAM_029030__ 876 GCGAAGTGATGATTTATCAAGCCTTCAAGTGCTGCAGGTGGGAGGCGCCA 925
BSNT_04707___ 926 AGTTTAGTGCTGAAGCCGCGCGCAGGGTAAA-AGCTGTTTTCGGCTGCAC 974
|.||.||.|||||.||.||.|||.|.||||| ||| |.||||||.|||||
RBAM_029030__ 926 AATTCAGCGCTGAGGCGGCCCGCCGCGTAAAGAGC-GCTTTCGGATGCAC 974
BSNT_04707___ 975 GCTGCAGCAGGTATTCGGAATGGCAGAGGGTCTCGTCAATTATACGAGAT 1024
.||.||||||||.|||||||||||.||.||..|.||.||||||||||||.
RBAM_029030__ 975 CCTTCAGCAGGTTTTCGGAATGGCGGAAGGATTGGTGAATTATACGAGAC 1024
BSNT_04707___ 1025 TGGATGATCCTGAGGAGATCATTGTCAACACCCAAGGAAAACCGATGTCC 1074
|||||||||||||.||||||||||||||.||.|||||.|.|||||||||.
RBAM_029030__ 1025 TGGATGATCCTGAAGAGATCATTGTCAATACGCAAGGCAGACCGATGTCA 1074
BSNT_04707___ 1075 CCATATGATGAAGTGCGTGTTTGGGATGATCATGATCGCGACGTAAAACC 1124
||.|.||||||.||..|.||||..||.|||.|.|..||.||.||....||
RBAM_029030__ 1075 CCTTTTGATGAGGTAAGGGTTTTAGACGATGACGGGCGGGATGTCGCCCC 1124
BSNT_04707___ 1125 TGGTGAAACAGGCCATCTGCTGACGCGGGGACCGTATACAATTCGCGGTT 1174
.||||||.|.||.|||.||.|.||.||.||.||.||.||.||||||||.|
RBAM_029030__ 1125 CGGTGAAGCGGGACATTTGTTTACACGCGGCCCTTACACGATTCGCGGAT 1174
BSNT_04707___ 1175 ACTATAAGGCGGAAGAGCATAATGCTGCTTCATTTACTGAGGACGGTTTT 1224
|.|||||.|||...||.|||||||.....|||||.||.|..|||||.|||
RBAM_029030__ 1175 ATTATAAAGCGCCTGAACATAATGAAAGATCATTCACAGCCGACGGATTT 1224
BSNT_04707___ 1225 TACCGCACGGGTGATATCGTCAGGCTGAC-ACGAGACGGCTATATTGTCG 1273
||.|..||.||.||||||||||..||||| .|| |||||||||||..|||
RBAM_029030__ 1225 TATCAGACCGGCGATATCGTCAAACTGACGGCG-GACGGCTATATCATCG 1273
BSNT_04707___ 1274 TTGAAGGCCGTGCGAAGGATCAAATTAACCGTGGGGGAGAAAAGGTTGCG 1323
|.|||||.||||||||.||||||||.||.||.||.||.|||||..|.||.
RBAM_029030__ 1274 TCGAAGGACGTGCGAAAGATCAAATCAATCGGGGCGGTGAAAAAATAGCC 1323
BSNT_04707___ 1324 GCTGAAGAGGTAGAAAATCATCTGCTGGCGCATCCGGCTGTCCATGATGC 1373
|||||.|||||.||||||||.||.||.||||||||.||.||.||||||||
RBAM_029030__ 1324 GCTGAGGAGGTGGAAAATCACCTTCTTGCGCATCCTGCCGTTCATGATGC 1373
BSNT_04707___ 1374 GGCAATGGTCTCCATGCCTGATCAATTTCTTGGCGAGAGATCTTGTGTGT 1423
|||.|||||.||.|||||.|||.|.|||||.||.|||.||||.|||||||
RBAM_029030__ 1374 GGCCATGGTTTCAATGCCGGATGATTTTCTCGGGGAGCGATCCTGTGTGT 1423
BSNT_04707___ 1424 TCATTATTCCCAGAGATGAAGCCCCAAAAGCCGCAGAGCTCAAAGCATTT 1473
||.|.||.||.|.||..|||||.||.|||.|.|.||||||.|||||||||
RBAM_029030__ 1424 TCGTCATCCCAAAAGGAGAAGCGCCGAAACCGGGAGAGCTGAAAGCATTT 1473
BSNT_04707___ 1474 TTGAGAGAGCGCGGACTGGCGGCATATAAAATCCCTGACCGAGTTGAATT 1523
|||.|.|||||||||||||||||||||||||||||.|||||..|||||||
RBAM_029030__ 1474 TTGCGTGAGCGCGGACTGGCGGCATATAAAATCCCCGACCGGATTGAATT 1523
BSNT_04707___ 1524 TGTCGAATCCTTCCCGCAGACAGGGGTAGGAAAGGTAAGCAAAAAGGCTC 1573
|.|||..||.||||||.|.||.||.||.||.|||||.||.|||||||.||
RBAM_029030__ 1524 TATCGCTTCTTTCCCGAAAACCGGCGTCGGCAAGGTCAGTAAAAAGGATC 1573
BSNT_04707___ 1574 TTCGTGAAGCTATTTCCGAAAAACTTCTTGCAGG--GGC---AAAAAAAT 1618
||||.|||.|.||..||.|||||.| .|.| ||| ||..|||.
RBAM_029030__ 1574 TTCGCGAAACGATCGCCCAAAAAGT-----AAAGCCGGCTGAAATCAAAC 1618
BSNT_04707___ 1619 AA------ 1620
||
RBAM_029030__ 1619 AATCTTAA 1626
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