Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04706 and RBAM_029020

See Amino acid alignment / Visit BSNT_04706 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:15
# Commandline: needle
#    -asequence dna-align/BSNT_04706___dhbB.1.9828.seq
#    -bsequence dna-align/RBAM_029020___dhbB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04706___dhbB-RBAM_029020___dhbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04706___dhbB-RBAM_029020___dhbB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04706___dhbB
# 2: RBAM_029020___dhbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 982
# Identity:     685/982 (69.8%)
# Similarity:   685/982 (69.8%)
# Gaps:          98/982 (10.0%)
# Score: 2238.0
# 
#
#=======================================

BSNT_04706___      1 ATGGCTATACCTGCCATTCAGCCG--TATCAAATGCCGACAGCGTCTGAT     48
                     .||||||||||..|.||||  |||  |||....|||||||||||||.|||
RBAM_029020__      1 TTGGCTATACCGTCTATTC--CCGCATATGCGCTGCCGACAGCGTCAGAT     48

BSNT_04706___     49 ATGCCGCAAAACAAAGTATCATGGGTGCCTG-ATCCAAATCGGGCTGT-C     96
                     |||||..||||.||||||||.|||..| ||| ||||.||.||.||.|| |
RBAM_029020__     49 ATGCCTGAAAATAAAGTATCGTGGACG-CTGAATCCGAAACGTGCGGTGC     97

BSNT_04706___     97 TTGTTAATACACGATATGCAAAACTATTTTGTCGATGCTTTCACAGCGGG    146
                     || .|.||.||.||.|||||.||.|||||.|||||||||||   .|||..
RBAM_029020__     98 TT-CTGATCCATGACATGCAGAATTATTTCGTCGATGCTTT---TGCGAA    143

BSNT_04706___    147 AGCGT----CTCCGGTAATAGAG--CTTTCAGCGAATATACGAAAGCTGA    190
                     || ||    |||||.|.|.||||  .|.|||  ||||||...|||..|.|
RBAM_029020__    144 AG-GTGAAGCTCCGATCACAGAGGCGTCTCA--GAATATCAAAAAAATAA    190

BSNT_04706___    191 AGAATCAATGTGTTCA----GCTTGGGATTCCTGTTGTCTATACCGCACA    236
                     |..|.|||||    ||    .||.||.|||||.||.||.||||||||.||
RBAM_029020__    191 AAGAGCAATG----CAAAGCACTCGGCATTCCGGTGGTGTATACCGCGCA    236

BSNT_04706___    237 GCCGGGAAGCCAAAATCCGGATGACCGTGCGCTGCTGACAGACTTTTGGG    286
                     ||||||.||||||.|.||||..|||||||||||||||||.||.|||||||
RBAM_029020__    237 GCCGGGCAGCCAAGACCCGGCGGACCGTGCGCTGCTGACGGATTTTTGGG    286

BSNT_04706___    287 GCCCGGGATTAAACAGCGGTCCTTATGAGGAGAAAA--TTATAACCGAGC    334
                     |.|||||..||||.|||||.||||||||  ||||||  |.||..|.||||
RBAM_029020__    287 GGCCGGGGCTAAAAAGCGGGCCTTATGA--AGAAAAGGTCATTCCGGAGC    334

BSNT_04706___    335 TGGCACCAGAGGATGATGATCTTGTGCTGACAAAATGGAGATACAGCGCG    384
                     |.||.||.||.|||.|.||..||||.||.|||||.|||||||||||||||
RBAM_029020__    335 TTGCCCCGGATGATCAGGACATTGTCCTCACAAAGTGGAGATACAGCGCG    384

BSNT_04706___    385 TTTAAGAGAACGAATCTGCTTGAAATGATGCG-CAAAGAGGGACGCGATC    433
                     |||||..|.||||||||.|||||.||.||||| .||||.||.| |.||.|
RBAM_029020__    385 TTTAAACGGACGAATCTCCTTGAGATCATGCGTGAAAGCGGCA-GAGACC    433

BSNT_04706___    434 AGCTGATCATTACAGGAATTTACGCCCATATCGGCTGTCTTGTTACAGCA    483
                     ||||.||.|||||.||||||||.||.||.|||||||||||.||.|||||.
RBAM_029020__    434 AGCTCATGATTACGGGAATTTATGCACACATCGGCTGTCTCGTCACAGCC    483

BSNT_04706___    484 TGTGAAGCATTTATGGAGGATAT-TAAAGCCTTTTTGGTGGGAGATGCAG    532
                     |||||||||||||||||.||||| .|||| |||.||..|.|||||.||.|
RBAM_029020__    484 TGTGAAGCATTTATGGATGATATCCAAAG-CTTCTTTATCGGAGACGCCG    532

BSNT_04706___    533 TTGCTGATTTTTCATTAGAAAAACATCAAATGGCGCTGGACTATGCGGCT    582
                     |||||||||||||.|.||||||||||.|.|||||..|.||.||||||.||
RBAM_029020__    533 TTGCTGATTTTTCTTCAGAAAAACATAAGATGGCCATCGAATATGCGTCT    582

BSNT_04706___    583 GGACGCTGTGCGTTTACCGTGATGAC-----TGACAGTC----TTCTTGA    623
                     ...|||  ||||.||||       ||     |||||..|    |.||.||
RBAM_029020__    583 CAGCGC--TGCGCTTAC-------ACAGCTTTGACAAACGAAGTGCTGGA    623

BSNT_04706___    624 TCAGCT--GCAGAATGCGCCGGCAGACGTTCAAAAAACGTCAGCAAACAC    671
                     .|.|||  ||.|  .||||||      |||         ||.|.|     
RBAM_029020__    624 GCTGCTGGGCGG--CGCGCCG------GTT---------TCTGGA-----    651

BSNT_04706___    672 TGGCAAAAAGAATGTGTTTAC-----ATGTGAGAATA-------TCCGTA    709
                      ||..||.||||  .||||.|     || |||.||.|       |.||..
RBAM_029020__    652 -GGAGAAGAGAA--GGTTTCCGCCGTAT-TGACAAAAGACCGGGTGCGGG    697

BSNT_04706___    710 AACAAATTGCTGAGCTTCTACAAAAAACACCGGAAGACATCACAGATCAA    759
                     ||||||||||.|.|.||||.|||.||.|||||...||.||..|.|||||.
RBAM_029020__    698 AACAAATTGCGGCGATTCTTCAAGAATCACCGTCTGATATTCCGGATCAT    747

BSNT_04706___    760 GAGGATTTGCTCGATCGTGGTCTTGATTCGGTAAGGATCATGA-CATTGG    808
                     ||.||..||||.||..|.||||||||.||.||.||.||||||| |.|| |
RBAM_029020__    748 GAAGACCTGCTGGACAGAGGTCTTGACTCCGTCAGAATCATGAGCCTT-G    796

BSNT_04706___    809 TGGAACAATGGCGCCGTGAAGGGGCAGAGGTGACTTTCGTGGAATTGGCT    858
                     |.||||.||||||||||||.||.||.||.|||||.||.||||||.||||.
RBAM_029020__    797 TCGAACTATGGCGCCGTGACGGAGCTGAAGTGACGTTTGTGGAACTGGCG    846

BSNT_04706___    859 GAACGCCCAACGATCGAAGAATGGCAGAAATTGCTCACAACCCGCAGC-C    907
                     ||...|||.|||.|.|||||.|||..||.|.|.||..|..|||| |.| |
RBAM_029020__    847 GAGAACCCGACGCTGGAAGAGTGGTGGAGACTTCTTTCTTCCCG-ATCTC    895

BSNT_04706___    908 AGCAAGTGCTGCCAAACGCGGATTATTTATAA    939
                     |..||||..||||.||.||.||||||||||||
RBAM_029020__    896 AAAAAGTCTTGCCGAATGCAGATTATTTATAA    927


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04706 and RBAM_029020

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
