Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04696 and RBAM_028970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:12
# Commandline: needle
# -asequence dna-align/BSNT_04696___yukF.1.9828.seq
# -bsequence dna-align/RBAM_028970___yukF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04696___yukF-RBAM_028970___yukF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04696___yukF-RBAM_028970___yukF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04696___yukF
# 2: RBAM_028970___yukF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1243
# Identity: 951/1243 (76.5%)
# Similarity: 951/1243 (76.5%)
# Gaps: 32/1243 ( 2.6%)
# Score: 3537.5
#
#
#=======================================
BSNT_04696___ 1 ATG------CCGAATGATCCGTTTAAATATAGTTTTGACAGACTTGAAGA 44
||| ||.||.|||||.|||||.||.|||||.|||||.||||||||
RBAM_028970__ 1 ATGACCAATCCAAAGGATCCATTTAAGTACAGTTTCGACAGGCTTGAAGA 50
BSNT_04696___ 45 TGTGGCTGATCATATCAGCGACGTTCTGCGGTGCCCGATCACCATAGAGG 94
|||.||.||.||||||||.||.|||||.|..|||||.||.||.|||||.|
RBAM_028970__ 51 TGTTGCCGACCATATCAGTGAAGTTCTTCAATGCCCCATTACAATAGAAG 100
BSNT_04696___ 95 ATGTTAACCACAAGCTGCTTGCCTACAGTACACACAGCGACTGCACAGAC 144
|.|||||.||.||.||||||||.|||||.||.||||||||.||.|||||.
RBAM_028970__ 101 ACGTTAATCATAAACTGCTTGCATACAGCACGCACAGCGATTGTACAGAT 150
BSNT_04696___ 145 CCTGCCCGGACGTCTACCATTATTGGCAGAAGGGTACCGGAGAAGGTGAT 194
||.|||||||||||.||.|||||.||..|.|||||.|||||.||.||.||
RBAM_028970__ 151 CCGGCCCGGACGTCGACGATTATCGGGCGGAGGGTGCCGGAAAAAGTCAT 200
BSNT_04696___ 195 TAACAAGTTGTGGAAAGACGGGACAATTCCAGCTCTCTTAAAAACGGACC 244
.|||||..|.|||||||||||.||.|||||.|||||.|||||||||||||
RBAM_028970__ 201 CAACAAACTCTGGAAAGACGGAACCATTCCGGCTCTTTTAAAAACGGACC 250
BSNT_04696___ 245 AGCCGATCAGAGTCAAGCAAATTGATGAAGTCGGGCTGAGCAATCGCGTC 294
|||||||||.|||.||..|||||||.||.||.||.||||||||.|||||.
RBAM_028970__ 251 AGCCGATCAAAGTGAAAGAAATTGACGAGGTGGGCCTGAGCAACCGCGTG 300
BSNT_04696___ 295 GCTATTTCGATTTGGAAAAACAAGCAAGTGCTTGGCTTCATATGGGCTCT 344
||.|||||.||.||||||||||..||.||.||.||.||.||.|||||.||
RBAM_028970__ 301 GCGATTTCCATCTGGAAAAACAGTCAGGTTCTCGGATTTATTTGGGCGCT 350
BSNT_04696___ 345 TGAGATCCAAAAAA----CATTGTCCGATGAAGATCTGCTGACATTGCAA 390
|||||||.|||||| ||.| ||.||.||||||..||||.|.||.
RBAM_028970__ 351 TGAGATCAAAAAAAAGCTCAAT----GACGAGGATCTGAAGACACTTCAG 396
BSNT_04696___ 391 ATGGCAGCAAAAGCAGTGAAAAACAAGCTTCTCAAACTTCAAATCAGAAA 440
.|||||||.|||||.|||...|||||.|||.|..|.||.||.|||.|.||
RBAM_028970__ 397 CTGGCAGCCAAAGCGGTGCGGAACAAACTTTTGCACCTGCAGATCCGCAA 446
BSNT_04696___ 441 AACGAAAAATGAAGAACGCAGCCAAGAATTTTTCTGGAAAATGCTGACCG 490
||||||||..|||||.||..||||.||.|||||.||||||||||||||||
RBAM_028970__ 447 AACGAAAATCGAAGAGCGGGGCCAGGAGTTTTTTTGGAAAATGCTGACCG 496
BSNT_04696___ 491 GACACATCCATCAGGAGGATGATATGGCGGATGGGTTCCATAAGCTTGGA 540
|.||.||..|||||||.|..||.|||||.||.|||||.||||||||.|||
RBAM_028970__ 497 GCCATATTTATCAGGAAGCCGAAATGGCCGAAGGGTTTCATAAGCTCGGA 546
BSNT_04696___ 541 ATGGCCGCT-CCTTCAGAGTTTTCCGTTATGATCATCCGCATAAATGGCG 589
|||| |||| ||.||.|.|||...|||.|||||||||||..||.|||..|
RBAM_028970__ 547 ATGG-CGCTGCCGTCCGTGTTCAGCGTCATGATCATCCGTTTACATGATG 595
BSNT_04696___ 590 AGCTGACTGAAAAAATCGAACAGCAGCTGCAATATTTACAGGAAACGACC 639
|||||||||||||.|..||||||||||||||||||||.|||||||||||.
RBAM_028970__ 596 AGCTGACTGAAAAGACGGAACAGCAGCTGCAATATTTGCAGGAAACGACA 645
BSNT_04696___ 640 CAGCAGGTTTACGTGCTGCTGGCGACCGTAGATTCCAATGAACTTATTAT 689
||||||.||.|.||..||||||||||.||.|||||.||||||.|.||..|
RBAM_028970__ 646 CAGCAGATTCATGTCATGCTGGCGACTGTCGATTCAAATGAATTAATCTT 695
BSNT_04696___ 690 ATTAACCTCACCCAAAACAGATCATCCTTTTCAAGATTTAAAACAGTTTG 739
||||.||.|.||.|||||.|||||.||||||.|||||.||||.||.||.|
RBAM_028970__ 696 ATTAGCCGCGCCGAAAACCGATCAGCCTTTTAAAGATGTAAAGCACTTCG 745
BSNT_04696___ 740 --CTTTAAGTACGCAAAAACAGCTGAAGGAGCGGTATAAAATAGAAGACG 787
|||.| ||..|||||||||||||||||.||.||||||||.||.||.|
RBAM_028970__ 746 CCCTTCA--TATTCAAAAACAGCTGAAGGAACGATATAAAATTGAGGATG 793
BSNT_04696___ 788 TTTCTATCGCTTTTGGCGGAATATACAACTCTATTTCTTTTGTCTCCCGC 837
..||.||.||..|.|||||.||.|||.|.||.|||||||.|||.|.||||
RBAM_028970__ 794 CATCGATTGCGGTCGGCGGTATTTACGAATCGATTTCTTATGTTTACCGC 843
BSNT_04696___ 838 TCCTATCAGGAAGCATTGTCCGTCTTAAAAACGAAGGAACGGTTCGCTGA 887
||||||||||||||..|.|||||.||||||.||||.||.|||||.| |||
RBAM_028970__ 844 TCCTATCAGGAAGCGCTTTCCGTATTAAAAGCGAAAGAGCGGTTTG-TGA 892
BSNT_04696___ 888 -AGAGACCAAACATTTTTTCAGCTTTTCTGAGTTAGGTATTTATCAATAC 936
|||.||||||||..|||||||||||||.||..|.||.||||||||.|||
RBAM_028970__ 893 GAGAAACCAAACACCTTTTCAGCTTTTCGGAACTCGGCATTTATCAGTAC 942
BSNT_04696___ 937 TTAGATGTCTTAAATGAAAAACGGAA--ACAGGCGGGCCATTAT-AATTA 983
.|.|||||.||..||||||||||.|| ||| |||| |..||| ||.||
RBAM_028970__ 943 CTGGATGTGTTGGATGAAAAACGCAAGCACA-GCGG--CTATATGAACTA 989
BSNT_04696___ 984 CTCGCTTTCCAAACTGGAACAATATGACCGGGATCACCAGTCAAATCTGG 1033
.||.||.||.||.||.||.||.||||||.||||.|||||..|..||.|||
RBAM_028970__ 990 TTCCCTCTCAAAGCTTGAGCAGTATGACAGGGAGCACCAAGCCGATATGG 1039
BSNT_04696___ 1034 TAGAGACGCTAGAGCGCTTTATTGAAGCGGACAGCAACGTGAATACGGCT 1083
||.|.|||||.||.|..||||||||.||.|||||||||||.||.||.||.
RBAM_028970__ 1040 TAAAAACGCTCGAACATTTTATTGATGCCGACAGCAACGTCAACACTGCC 1089
BSNT_04696___ 1084 TC-CAAGCTGTTAAATATACACGTTAATACGCTGAATTACCGACTCAAGC 1132
.| .|||| |.|.||.||.||.||.|||||..||||||||.|.||.||..
RBAM_028970__ 1090 GCTAAAGC-GCTTAACATCCATGTCAATACATTGAATTACAGGCTGAAAA 1138
BSNT_04696___ 1133 GGATCAGCCAGATCGCTGAAATTGATTTGAAAAATGTGAATCAAAAATTC 1182
|.||||||||.|||||.|||||.||.||.||||||||||||.||||.||.
RBAM_028970__ 1139 GAATCAGCCATATCGCAGAAATCGACTTAAAAAATGTGAATGAAAAGTTT 1188
BSNT_04696___ 1183 ACCATCTATTTAGATATCAAACTTCGGCA-CATGGATTTGTGA 1224
||.||.||..|.||||||||||||| ||| ||||||||.||||
RBAM_028970__ 1189 ACGATTTACCTTGATATCAAACTTC-GCAGCATGGATTCGTGA 1230
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