Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04693 and RBAM_028950

See Amino acid alignment / Visit BSNT_04693 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:11
# Commandline: needle
#    -asequence dna-align/BSNT_04693___yukD.1.9828.seq
#    -bsequence dna-align/RBAM_028950___yukD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04693___yukD-RBAM_028950___yukD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04693___yukD-RBAM_028950___yukD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04693___yukD
# 2: RBAM_028950___yukD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     203/248 (81.9%)
# Similarity:   203/248 (81.9%)
# Gaps:          10/248 ( 4.0%)
# Score: 854.0
# 
#
#=======================================

BSNT_04693___      1 ------ATGTATATTGATATTACAATAGATTTGAAACATTATAACGGCAG     44
                           ||||||||.|||||||||||||||||.|.|||||||||||||||
RBAM_028950__      1 ATGAATATGTATATCGATATTACAATAGATTTAACACATTATAACGGCAG     50

BSNT_04693___     45 TGTCTTTGATCTCAGATTGTCAGATTACCACCCGGTGAAAAAAGTAATTG     94
                     .|||||.|||||||||||||||||||||||..|.|||||||||||.||.|
RBAM_028950__     51 CGTCTTCGATCTCAGATTGTCAGATTACCATTCTGTGAAAAAAGTCATCG    100

BSNT_04693___     95 ATATTGCTTGGCAGGCCCAAAGC--GTATCTATGCCCCCGCGCGAAGGGC    142
                     |||||||..|||||||.|  |||  |||||..|.||.|||||.|||||..
RBAM_028950__    101 ATATTGCCCGGCAGGCTC--AGCATGTATCCGTTCCGCCGCGTGAAGGCT    148

BSNT_04693___    143 ACTGGATCAGAGTGGTGAACAAGGATAAGGTGTTTTCCGGAGAATGCAAG    192
                     |.||||||||||||||.||.||.||.|.|||.||||||||||||...|||
RBAM_028950__    149 ATTGGATCAGAGTGGTCAATAAAGAAACGGTTTTTTCCGGAGAACAAAAG    198

BSNT_04693___    193 CTGTCTGATTGCGGCATTACAAACGGAGACCGGCTTGAAATATTATGA    240
                     ||.|||||.|||||||||||.|||||||||||.||||||||.||||||
RBAM_028950__    199 CTATCTGACTGCGGCATTACGAACGGAGACCGTCTTGAAATTTTATGA    246


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