Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04686 and RBAM_028910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:09
# Commandline: needle
# -asequence dna-align/BSNT_04686___yueC.1.9828.seq
# -bsequence dna-align/RBAM_028910___yueC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04686___yueC-RBAM_028910___yueC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04686___yueC-RBAM_028910___yueC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04686___yueC
# 2: RBAM_028910___yueC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 514
# Identity: 342/514 (66.5%)
# Similarity: 342/514 (66.5%)
# Gaps: 74/514 (14.4%)
# Score: 1034.0
#
#
#=======================================
BSNT_04686___ 1 ATGGAAAAGGGGATCATGATT-----TGTATG--CTCTCCTTTTCCCTTT 43
|||||||| |.|||| |||.|| ||||||||||.|||||
RBAM_028910__ 1 ATGGAAAA-------AGGATTGCTGCTGTTTGCTCTCTCCTTTTTCCTTT 43
BSNT_04686___ 44 TCATACCCTCTGC-AGCGGCTGCC-CAAACTGAAGAAAATACAGATGTCG 91
||.|.||| | |||.||.||| |.|| |||.||||||||.||||||.
RBAM_028910__ 44 TCCTTCCC----CAAGCCGCAGCCGCGAA-TGAGGAAAATACTGATGTCA 88
BSNT_04686___ 92 CGCCAAACCAGTATGAGAAAAAAGACATCGAAA-TCGATACGAATTATTT 140
.|||.||..|.|||||.||.||||||||.|||| ||| ||||.||||..|
RBAM_028910__ 89 AGCCGAATGAATATGAAAAGAAAGACATTGAAATTCG-TACGGATTACCT 137
BSNT_04686___ 141 GCATGAAGATACCTACTATGAAGAAAAAACAGAACTGCCTGAGGAACAAA 190
|||.||.|||.||||||..||.||||||||.|..||.||..|.|||||.|
RBAM_028910__ 138 GCACGACGATGCCTACTCCGAGGAAAAAACGGCGCTTCCGAAAGAACAGA 187
BSNT_04686___ 191 AGGATATCACTTTTGAT----AAACCGAAGGACAAGGACGCCGAGCTGAT 236
|||||||.||.|||||| |..||||| .||..|||.|.|.|.|||||
RBAM_028910__ 188 AGGATATTACGTTTGATCAGCAGGCCGAA-AACCCGGATGACAAACTGAT 236
BSNT_04686___ 237 A--AAAGATTTGTTTACATCAACAAATGCCGAGGATTCC-AACACGATTG 283
| |||| |||||||||||..||.|..|.||| || ||.|||||..
RBAM_028910__ 237 ATCAAAG--TTGTTTACATCGTCAGACACGGAG----CCGAATACGATCA 280
BSNT_04686___ 284 CGGCCCAGTCGAAACAGCTTGGAATTACTTTTGCTGA------------- 320
..||.||.||||||.|.||.||.||.||.|||||.||
RBAM_028910__ 281 AAGCGCAATCGAAAAAACTGGGTATCACATTTGCCGAGCCTGCGGTGCGG 330
BSNT_04686___ 321 AAAACCAAT-GACAAAGACATCATCAACGGAAACAGAAGATGAACAAGAA 369
.|.||| | |.| |||.|| ||||||.||||| |||.||||
RBAM_028910__ 331 CATACC--TCGGC--AGATAT-------GGAAACGGAAGA-GAAAAAGA- 367
BSNT_04686___ 370 ACATCATCATTGCTGCTGCCGATGATCTATGTCGTACTGATCCTGCTCGG 419
|.||.|..|||||.||..|.||.||||.|||..|||||||.|||||
RBAM_028910__ 368 ----CTTCTTATCTGCTTCCTGTCATTTATGCCGTTTTGATCCTCCTCGG 413
BSNT_04686___ 420 AATTGCAGGC-ATCGTGTTCCTCATCCCAAAAGTCACAGCGCAGGAAAA- 467
.||||| ||| ||..|.|..||.|||||.||||||||.|||||||||||
RBAM_028910__ 414 GATTGC-GGCGATGATCTATCTGATCCCGAAAGTCACGGCGCAGGAAAAG 462
BSNT_04686___ 468 -CAAGAAGGCGTAG 480
|| |||..|||.
RBAM_028910__ 463 GCA--AAGCGGTAA 474
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